Oleidesulfovibrio alaskensis: Dde_2446
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Entry
Dde_2446 CDS
T00294
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
dde
Oleidesulfovibrio alaskensis
Pathway
dde03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dde00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Dde_2446
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dde03019
]
Dde_2446
03400 DNA repair and recombination proteins [BR:
dde03400
]
Dde_2446
Enzymes [BR:
dde01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Dde_2446
Messenger RNA biogenesis [BR:
dde03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Dde_2446
DNA repair and recombination proteins [BR:
dde03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Dde_2446
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
RecQ_Zn_bind
HRDC
Helicase_C
HTH_40
ResIII
DUF3379
Motif
Other DBs
NCBI-ProteinID:
ABB39243
UniProt:
Q30YK3
LinkDB
All DBs
Position
2467747..2469966
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AA seq
739 aa
AA seq
DB search
MLDTAREILISTYGFRDFQGLQKDIIEHTASGGDALVLMPTGGGKSLCYQIPSIMRQGTG
IVISPLIALMQDQVDSLTQMGVRAAFLNSSLSPEKQREVEARLLSGMLDLVYVAPERLVQ
PAFLGLLERITPALFAIDEAHCVSQWGHDFRPEYTRLTILHEQFPHVPRIALTATADGPT
RRDIIRHLDLQDATVFSTGFDRPNISYTIQPKDKPLEQLLHFIRTRHKGQSGIVYRLSRK
KVEETAAWLCAKGIEALPYHAGLNAIQRHHNQERFMREDGLVMVATVAFGMGVDKPDVRF
VAHLEPPKSLEAYHQETGRAGRDGLPADAWMTYGLADVVQLRRMLGQGEEDSPRRMVELR
KLDAMLAFCETTECRRKVLLGYFGEHDREPCGNCDTCQFPVETWDGTVAAQKALSAVYRT
GQRFGAAHLTDILTGKLTDRIRSHGHNDLKTFGCGKELGASQWKGVFRQLACLGLLATDA
DGHGGLRLTPESWQVLRGERMLSFRRDILGRSATRALAKTQADAALQNALNTEESRQLWD
TLRSLRGRLAQERDVPPYAVFADRALLEMVCFRPRTPDDLQCIHGVGKAKLSMFGQEFLD
ALLSHEAAWGRPDDLPALPERRPATAAKKENGLTDTIRETLQLFNKLQDMQAVAEARALK
PATICNHLVRCIRHGELTTEQVVPLPAHELAEIRGVLGETASLGGVTAAHGRLKGRYDFE
TLRLVQAELFIRRGDEEDW
NT seq
2220 nt
NT seq
+upstream
nt +downstream
nt
atgctcgacacagcccgggaaatcctcatctccacatacggattccgcgactttcagggg
ctgcaaaaagatatcatagaacacaccgcatccggcggcgacgcgctggtgctcatgccc
acaggcggcggcaagtcactgtgctaccagattccctccatcatgcggcagggcaccggt
attgtcatatcgccgcttatcgcgcttatgcaggatcaggtggacagcctcacgcagatg
ggagtacgcgcggcttttcttaactccagcctgtctcctgaaaaacagcgcgaggtggaa
gcacgcctactgagcggcatgctcgatctcgtctatgtagcgcccgaacggctggtgcag
cctgcttttctggggctgcttgaaagaataacacccgcgctgttcgccattgacgaggcg
cattgcgtttcgcagtgggggcatgatttcaggccggaatacacacggctgaccattctg
catgagcagtttccgcatgtgccccggatagctcttaccgccacggcggacgggcccacc
agacgcgacatcatcaggcatctggacctgcaggacgccactgttttttctacgggattc
gaccgccccaatatttcgtacaccatacagcccaaagacaagccgctggagcagctgctg
catttcatccgcacacgccacaaaggacagtcgggcatagtgtaccggctgagcagaaaa
aaagttgaagaaacagcagcctggctgtgtgcaaaaggcatagaagccctgccctatcac
gcagggctcaacgccattcagcgtcatcacaatcaggaacggttcatgcgtgaagacggg
ctggtcatggtggctaccgtggccttcggcatgggggtggacaagccggatgtacgcttt
gtggcacaccttgagccgccaaaaagtctggaagcctatcatcaggaaaccggacgtgcg
ggacgtgacggcctgcccgccgatgcatggatgacatacggtctggccgatgtggtgcaa
ttgcggcgcatgctgggccaaggcgaagaagacagcccgcggcgcatggtcgaactgcgc
aagctggatgccatgctcgccttttgcgaaacaaccgagtgccgccgtaaagtgctgctg
ggctatttcggcgaacacgacagagaaccctgcggaaactgcgacacctgtcagtttcct
gtagagacatgggacggcacggtggccgcccagaaagcactgagcgccgtataccgcacc
ggtcagcgcttcggcgccgcacacctgacagacatacttaccggcaagctgaccgaccgc
atacgcagccacgggcataacgacctgaaaacattcggctgcggcaaagaactgggtgca
tcgcaatggaaaggcgtgttcagacagctggcatgtctggggctgcttgccaccgatgcg
gacgggcacggcggcctgcgtctgacaccggaaagctggcaggtactgcgcggagaacgc
atgctgagcttccggcgtgacattctgggccgctccgccacacgtgcactggcaaaaaca
caggccgacgcggctctgcagaatgccctgaacacggaagaatccagacagctgtgggat
accctgcgctcgttacggggcaggctggcacaggaacgtgacgtgccgccctacgccgtt
tttgcggacagggccctgctggagatggtctgctttcggccgcgcacgccggatgacctg
caatgcattcacggcgtcggcaaagccaagctgtccatgttcgggcaggaatttcttgat
gcgctgctctcgcacgaagccgcctggggcaggccggacgatctgcccgcactgcccgaa
cgcagaccggctactgccgcaaaaaaggaaaacggccttaccgacaccatacgcgaaacg
ctgcagctttttaacaagctgcaggacatgcaggccgtggccgaggcccgcgccctgaaa
ccggccaccatatgcaatcatctggtacggtgcatacgtcatggcgagctgaccacggaa
caggtggtgcccctgcccgcgcacgagctggcagaaatacggggagtgctgggtgaaaca
gcttcgctgggcggagttaccgccgcgcacggcagactgaaaggccgctatgattttgaa
accctgcggctggttcaggccgagctgttcatcaggcggggtgacgaggaagactggtaa
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