Desulfitobacterium dehalogenans: Desde_2509
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Entry
Desde_2509 CDS
T02146
Name
(GenBank) Excinuclease ABC subunit C
KO
K03703
excinuclease ABC subunit C
Organism
ddh
Desulfitobacterium dehalogenans
Pathway
ddh03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ddh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Desde_2509
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ddh03400
]
Desde_2509
DNA repair and recombination proteins [BR:
ddh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Desde_2509
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
UvrC_RNaseH_dom
UVR
GIY-YIG
HHH_2
HHH_5
HHH
5_3_exonuc
GIY_YIG_2
Nuc_rec_co-act
Motif
Other DBs
NCBI-ProteinID:
AFM00840
UniProt:
I4AA55
LinkDB
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Position
2520597..2522372
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AA seq
591 aa
AA seq
DB search
MEILREKLSLLPDKPGVYLMKDASGQIIYVGKAKILKNRVRSYFTGSHNGKTQLMISLIA
DFETIITDSEVEALLLECNLIKKHNPKYNILLRDDKTYPFITITDEAHPRILVTRQVKKG
MGKYYGPYPNATAAKEAARLLNRLFPFRKCRQIPGKPCLYYHLGQCLGPCQEDVPKESYD
KIRKEAATFLKGDQGAILRSLEKKMKDASENLEFERAKEYRDLIEDLKKVGEKQNITLND
FVDRDVVGYAYTRDQLCIQIFYLRQGKLLSRDNFIFPYYEEPEEAFVSFLAQFYTESSAL
PQEILLPPLDISVLAKLFPMIVPQKGQKRDLVQMAMENAQTTLHEQISIEIRNLTECTQA
LEEIGNALGIPSLRTIESFDISNIAGTHSVAGMIQFLDGKPNRSQYRKFKIQPMPNIDDT
ASMHQVIERRYARLQQECLPLPDLILVDGGKGQINAALDALRNLKAAIPVAGMVKNDKHQ
TSALIDSAGRIHSLDRRSAGFRLMERIQNEVHRFAITFHRQQRAKSMTLSELDGIPGVGP
KRRQQLLRYFKSMDTIRLATVEELQKSGLPSPAALAVYEHFNPHKEENHDS
NT seq
1776 nt
NT seq
+upstream
nt +downstream
nt
atggagatacttcgggaaaaacttagtttattaccggataagccaggtgtctatctaatg
aaagatgcatccggccaaattatatatgtagggaaagcgaagattctcaaaaacagagtc
cgctcctactttaccgggtcccataatggaaaaacccagcttatgattagcttgattgcg
gattttgaaacgattattaccgattctgaggtggaagctttactcttagagtgcaacctt
attaaaaagcataatccaaagtataatattctattacgcgatgataaaacataccctttt
ataaccattaccgatgaagcacatcctcggattttggtgacacggcaagtaaaaaaaggg
atggggaaatactatggcccctaccccaatgctacagcggctaaagaagctgcccgactg
ctcaatcgcctctttccctttcgtaaatgccggcagattccgggcaaaccttgtctctat
taccatcttgggcaatgcttaggcccctgtcaggaggatgtccccaaagaatcttatgac
aaaatacgtaaagaagcggctacttttcttaaaggtgatcagggagcaattcttaggtcc
ctggagaaaaaaatgaaagacgcttcggaaaacctggaatttgaaagggcaaaagaatac
cgcgaccttatcgaggatctcaaaaaagtaggcgagaaacaaaacatcaccttaaacgac
tttgtggatcgggatgtggtagggtatgcttatacccgagatcaactctgtattcagatc
ttttatttgcgccagggaaaacttctgtctcgtgacaatttcattttcccttattacgaa
gaaccggaagaagcttttgtctcctttctggctcagttctacacagaaagttctgctctc
cctcaagaaattctcctccctcctctggatattagtgtattagcaaagctttttccgatg
atcgtgccgcaaaaaggacaaaagcgagatctggtgcaaatggctatggaaaatgctcaa
accaccttacatgagcagatttccatcgaaatacgaaacttgaccgaatgcacacaagct
ttggaggaaatcggcaatgccttaggcattccttccctccgcaccatcgagtcctttgat
atttccaatatcgccggcacccatagtgtggccggaatgattcagtttcttgatggcaaa
cccaaccgcagtcaatatcgcaaatttaagattcaacccatgcccaatatagatgatacc
gcatccatgcaccaagtgattgagcgccgctatgcccgtcttcagcaggagtgccttcct
cttcctgatcttatcctggtggatgggggcaagggacagattaatgcagccctggatgct
ctccgcaacttaaaggccgcgattcctgttgccggcatggtcaaaaacgacaagcatcaa
acttcggctttaatcgactccgctggccgaatccattccttggatcgccgttcagccggt
tttcgtttgatggaacggattcaaaatgaagtccatcgattcgctattactttccatcgg
caacaacgggctaaaagcatgaccctttccgagttggatggaataccgggtgtcggtccc
aagagaaggcaacagctcttgagatattttaaatccatggatactatccgcctagccact
gtggaggaacttcaaaaatccggtcttccttccccggcagctctcgcggtatatgaacat
ttcaaccctcataaggaggaaaaccatgattcttaa
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