Dictyostelium discoideum (cellular slime mold): DDB_G0278729
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Entry
DDB_G0278729 CDS
T00245
Symbol
repB
Name
(RefSeq) transcription factor IIH subunit
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
ddi
Dictyostelium discoideum (cellular slime mold)
Pathway
ddi03022
Basal transcription factors
ddi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ddi00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
DDB_G0278729 (repB)
09124 Replication and repair
03420 Nucleotide excision repair
DDB_G0278729 (repB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ddi03021
]
DDB_G0278729 (repB)
03400 DNA repair and recombination proteins [BR:
ddi03400
]
DDB_G0278729 (repB)
Enzymes [BR:
ddi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DDB_G0278729 (repB)
Transcription machinery [BR:
ddi03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
DDB_G0278729 (repB)
DNA repair and recombination proteins [BR:
ddi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
DDB_G0278729 (repB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ERCC3_RAD25_C
Helicase_C_3
ResIII
Helicase_C
SNF2-rel_dom
Motif
Other DBs
NCBI-GeneID:
8621779
NCBI-ProteinID:
XP_647819
dictyBase:
DDB_G0278729
UniProt:
O00835
LinkDB
All DBs
Position
3:1389108..1391685
Genome browser
AA seq
800 aa
AA seq
DB search
MSSGDSNLKRRRGGNTGQSSKSYNTWTDYEEDLEESGEFNQSIKKTTNTSSATLTSSEEK
GSLLDYSKRCILKQDNKSRPIWVCPDGHIFLETFSAIYKQASDFLVAIAEPVCRPQNIHE
YQLTPYSLYAAVSVGLETNDIITVLGRLSKLALPKEVEQFVRQCTQSYGKVKLVLQKNKY
FVESAYPEVLEFLLKDSSIATARIKPTLEESVVDPKTGFIINKEVVTGAQISGGLQANQS
LDPVLKNDALSNLLEEEEEDTVNNSDQHFHSFEIDPQQVEEVKKRCIQLDYPVLEEYDFR
NDTVNPNLNIDLKPTTMIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLSGITAACTVK
KSILVLCTSAVSVEQWKYQFKLWSNIEERQISKFTSDNKEKISNVAGVTITTYTMVAFGG
RRSAESLKIMNEITNREWGLVLLDEVHVVPAAMFRKVLTVTKAHCKLGLTATLLREDEKI
QDLNFLIGPKLYEANWLDLQKAGFLANVSCSEVWCPMTAEFYKEYLINDSQGKKKLLYTM
NPNKFRACEYLIRFHEQRGDKIIVFSDNVYALQKYAKGLGRYFIYGPTSGHERMSILSKF
QHDPTVRTIFISKVGDTSIDIPEATVIIQVSSHYGSRRQEAQRLGRILRPKPKSDGLYNA
FFYSLVSKDTQEMYYSTKRQQFLIDQGYSFKVISELPGIDQEVNLKYSSKQDQLDLLAQV
LGEGEDSGKNEILEEDFDDITRGAKKSKSSAPTVSRTTGGSTRALSGGNDMNYMEYQAPA
IYKSIPTQHALFKQRAKNKQ
NT seq
2403 nt
NT seq
+upstream
nt +downstream
nt
atgtcaagtggtgatagtaatttaaagagaagaagaggaggaaatactggtcaatcatca
aaatcatataatacatggactgattatgaagaagatttagaagaatctggtgaatttaat
caatcaataaaaaaaacaacaaatacatcaagtgcaacattaacatcatcagaagaaaaa
ggatcacttttagattattcaaagaggtgtatattaaaacaagataataaatcaagacca
atttgggtttgtccagatggtcatatatttttagagacattttcagcaatttataaacaa
gcatcagattttttagttgcaattgcagaaccagtttgtagaccacaaaatatacatgaa
tatcaattaacaccttattcattgtatgcagcggtctctgttggattagaaaccaatgat
attattacagttttagggagattatcaaaattagcactaccaaaagaggttgaacaattt
gttagacaatgtacacaaagttatggtaaagtgaagttagtattacaaaagaataaatat
tttgtggaatctgcatacccagaggtattggaattcctcttgaaagattcatcaattgca
acagcaagaataaaaccaacattggaagaatctgtggtggatccaaaaactggtttcatc
attaataaagaggttgttacaggtgcacagatttcaggtggtttacaagcgaatcaatca
ttggatccagttttaaagaatgatgcactctctaatctattggaggaggaggaagaggat
acagtaaataattcagatcaacattttcattcatttgaaattgatccacaacaagtggaa
gaagtgaaaaaacgttgtattcaattggattatccagtgttggaagaatatgattttcgt
aatgatacagtgaatccaaatttaaatatagatttaaagccaacaacaatgattcgtcca
tatcaagagaaatctttatcgaaaatgtttggtaatggtcgtgctcgttctggtattatt
gtattgccatgtggtgctggtaaatcactaagtggtattactgcagcatgtacagtgaaa
aagagtattctggtgttgtgtacaagtgcagtgtcggtggaacaatggaaatatcaattt
aaactttggagtaatatagaggagagacaaatttcaaaattcacaagtgacaataaggaa
aagattagtaatgttgcaggtgttaccattaccacctatacaatggttgcatttggtggt
agacgttcagcagaatcgttaaagattatgaatgaaattaccaatagggaatggggtttg
gtattattggacgaggtacatgtagtaccagcagcaatgtttagaaaggttttaacagtg
acaaaagcccattgtaaattgggtttaacagcaacattgttacgtgaagatgaaaagatt
caagatttgaatttccttattggtccaaaactttatgaggcaaattggttggatttacaa
aaagcaggtttccttgcaaatgtttcatgttcagaagtttggtgtccaatgacagcggaa
ttttataaagaatatttaatcaatgattctcaaggaaagaagaaacttctatatacaatg
aatccaaataaattccgtgcttgtgaatatttaattagattccatgaacaaagaggtgat
aagatcattgttttctctgataatgtttatgcacttcaaaagtatgccaaaggattgggt
agatatttcatttatggaccaacatcaggccatgaaagaatgagtattctctcgaaattt
caacatgatccaaccgtaagaaccattttcatttcaaaggttggtgatacctctatcgat
attccagaggcaaccgttatcattcaagtttcatcacattatggttcacgtcgtcaagag
gcacaacgtttaggtcgtattcttcgtccaaaaccaaaatctgatggtctttacaatgct
ttcttttattctttggtttcaaaagatactcaagaaatgtattacagtacaaagagacaa
cagtttttaattgatcaaggttatagttttaaggtcatttcagagttacctggtattgat
caagaagtaaacttaaaatattcttcaaaacaagatcaactcgatctattggctcaagta
ttgggtgaaggtgaagatagtggtaaaaatgaaattttagaagaagatttcgatgatatt
actcgtggtgcaaagaaatcaaaatcttctgctccaacagtttcaagaactactggtggt
tcaactagagcattatctggtggtaatgatatgaactatatggaatatcaagctcctgca
atttataaaagtattccaactcaacatgcattatttaaacaacgtgctaaaaataaacaa
taa
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