KEGG   Delftia sp. Cs1-4: DelCs14_2489Help
Entry
DelCs14_2489      CDS       T01497                                 

Definition
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
del  Delftia sp. Cs1-4
Pathway
del03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:del00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    DelCs14_2489
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:del03400]
    DelCs14_2489
Enzymes [BR:del01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     DelCs14_2489
DNA repair and recombination proteins [BR:del03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     DelCs14_2489
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S
Motif
Other DBs
NCBI-ProteinID: AEF89502
UniProt: F6B0K4
LinkDB All DBs
Position
complement(2842680..2845307)
Genome map
AA seq 875 aa AA seqDB search
MPATRSKSQASRPARPTKGATKAATPQASLALYRQKRDFTRTPEPSAEPSSETIAGQPGA
GALQFVIQKHWASHLHYDFRLELDGSMKSWAVPKGPSYDPADKRMAVQVEDHPMAYNRFE
GQIPPGQYGAGKVIIWDRGTWLPEGDAAEGYRKGKLKFELRGHKLQGRWALVRMRGKDDA
KKPAWLLIKEHDGLERAASEFNVVEDMPDSVAGLPLPTATAPITTPVTTPVATPVAAPMP
QSIAPQLATLVDHAPADAGQWIFESKFDGYRLLARIEDGAVRLFTRNGKDWTTKMPALAR
AFAALPLQSGWVDGEVLMLDSDSRPDFQALQNAFDGERTDHLVFFAFDLLWQDGQDLRPQ
PVEQRRQQLQSLLHKAPSDRLRFSEAFDAPPADLVAAACQLGLEGVIGKRRGSAYASRRS
ADWIKLKCGLRQEFVIAGYTDPQGTRTGLGALILAVHGEDGQLRAAGKVGTGFNRRTLAD
LRQRLERLATGTSPLADSRGLGSGVHWVRPTLLAEVSFAQWTEDGQVRHAVFHGLRADKP
ARSIVKEEPQHVPSTASSASAAAMPGAARPKTRNARAARLPASMTITHPERVIDPSTGIT
KMDLARYYATVAPFMITHLKSRPVAMVRAPDGIEGELFFQKHLDQAPLQGIAALSPELDP
GHAPLMEVSRREGLVAAAQMNTIEWHTWNARKDRIDRPDRMTFDLDPGEGVPWQQVQEAA
SLLHVLLQELELPAFLKTSGGKGLHVVVPIKRLLDWDTVKAFSQAVVQHLAHAVPQRFVA
KSGPRNRVGKIFVDYLRNGFGATTACAWTARARPGMGISVPVAWNELDRLTGGAHWTIRS
VDQRLRLGNSPWEHYGTAAVGLGRAMKALGFEAQR
NT seq 2628 nt NT seq  +upstreamnt  +downstreamnt
atgccggccacgcgcagcaagtcccaggcatcccgcccggcccgccccaccaaaggggcg
accaaggcggcgacaccccaggcctcgctcgcgctgtaccggcaaaagcgcgacttcacg
cgcacaccggaaccttcggcagaaccttccagtgagacgattgcagggcagcccggcgcg
ggcgccctgcaattcgtcattcaaaagcactgggccagccacctgcactacgactttcgg
ctggagctggacggcagcatgaagagctgggccgtgcccaagggccccagctacgacccg
gccgacaagcgcatggccgtccaggtggaagaccaccccatggcctacaaccgcttcgag
ggccagattccaccgggacagtacggcgcgggcaaggtcatcatctgggaccgtggcacc
tggctgcccgaaggcgatgcggccgaaggctatcgcaagggcaagctcaagttcgaactg
cgcggccacaagctgcagggccgttgggccctggtgcgcatgcgcggcaaggacgacgcc
aaaaagcccgcctggctgctgatcaaggagcacgacggcctggaacgtgctgccagcgaa
ttcaacgtggtcgaggacatgcccgacagcgtggccggccttcccctgcccaccgccaca
gcgcccatcaccacacccgtcaccacgcccgtcgctacgcccgtcgccgcgcccatgccg
cagagcatcgccccgcagctggcaaccttggtggaccatgcacctgcagatgccgggcaa
tggatcttcgagagcaagttcgacggctaccggctgctggcgcgcatcgaggacggcgcc
gttcgccttttcacacgcaacggcaaggactggaccaccaaaatgcccgccctggcccgc
gcctttgccgcgctgcccctgcaatcgggctgggtggatggcgaggtgctcatgctggac
agcgacagccgccctgacttccaggccctgcaaaacgcctttgacggcgagcgcaccgac
cacctggtgttcttcgcgtttgacctgctgtggcaggacggccaggacctgcggccccag
cccgtggagcagcgccgccagcagttgcagtccctgctgcacaaggcgccttcggaccgc
cttcgcttcagtgaggcctttgacgccccgcccgccgatctggtggccgccgcctgccag
ctgggcctggagggcgtgatcggcaagcggcgcggcagcgcctatgcctcgcggcgcagt
gcggactggatcaagctcaagtgcggcctgcgccaggaattcgtgatcgcgggctacacc
gatccccagggcacgcgcacgggcctgggcgccctgatcctggccgtgcatggcgaggac
ggtcagctgcgcgcggcaggcaaggtgggcacggggttcaacaggcgcaccctggccgac
ctgcgccagcgcctggagcgcctcgccaccggcacctcgccgctggcggacagccggggc
cttggcagcggggtgcactgggtgcgccccacgctgctggccgaggtctcgttcgcgcag
tggaccgaggacggccaggtccgccatgccgtattccacggcctgcgtgcggacaagcct
gcacgcagcattgtcaaagaggagccacagcacgtgccatcgaccgcatcttccgccagc
gctgcagccatgcctggcgctgcacgaccgaaaacccgcaatgccagggcggcacgactg
cccgcctcgatgaccatcacccatcccgagcgggtcatcgatccctccaccggcatcacc
aagatggatctggcgcgctactacgccacggtggcgcccttcatgatcacccacctcaag
tcccggcccgtggccatggtgcgggcgccggacggcatcgagggcgagctgttcttccaa
aagcacctcgaccaggcgccgctgcagggcatcgccgccctgtcgccggaactggacccc
ggccatgccccgctgatggaggtgtcccggcgcgaaggcctggtggcggcggcgcagatg
aacaccatcgaatggcacacctggaacgcgcgcaaggaccgcatcgaccggcccgaccgc
atgaccttcgacctggaccccggcgaaggtgtgccctggcagcaggtgcaggaggccgcc
agcctgctgcatgtgctgctgcaggagctggagctgccggccttcctcaagaccagcggc
ggcaagggcctgcacgtggtcgtgcccatcaagcggctgctggactgggacaccgtcaag
gccttctcgcaggccgtggtccagcacctggcccatgctgtgccccagcgcttcgtggcc
aaaagcgggccgcgcaaccgcgtgggaaagatttttgtggactacctgcgcaacggcttc
ggcgccaccacggcctgcgcgtggacggcccgggcgcggccgggcatgggcatctccgtg
cccgtggcctggaacgagctggacaggctcacgggcggcgcgcactggaccattcgctcg
gtagaccagcgcctgcgcctgggcaactccccttgggagcactacggcacggccgccgtg
ggcctgggccgcgccatgaaggcgctgggcttcgaggcgcagcgttga

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