Candidatus Doolittlea endobia: MHIR_DE00647
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Entry
MHIR_DE00647 CDS
T04480
Symbol
pcnB
Name
(GenBank) Poly(A) polymerase I precursor
KO
K00970
poly(A) polymerase [EC:
2.7.7.19
]
Organism
den
Candidatus Doolittlea endobia
Pathway
den03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
den00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MHIR_DE00647 (pcnB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
den03019
]
MHIR_DE00647 (pcnB)
Enzymes [BR:
den01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.19 polynucleotide adenylyltransferase
MHIR_DE00647 (pcnB)
Messenger RNA biogenesis [BR:
den03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
MHIR_DE00647 (pcnB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PolyA_pol
PolyA_pol_arg_C
PolyA_pol_RNAbd
Motif
Other DBs
NCBI-ProteinID:
CUX96881
UniProt:
A0A143WTH3
LinkDB
All DBs
Position
I:complement(761903..763222)
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AA seq
439 aa
AA seq
DB search
MTIIPRDKHTISRKEISENALKVLYRLKKAGYEAYLVGGGVRDLLLGKKPKDFDITTSAT
PEQMRKLFRNCRLVGRRFRLAHVIFGSEIIEVATFRGHHQVVMSEKNVGKLALTGDNGIL
LRDNIFGSIEEDAQRRDFSVNSLYYSVSDFTLRDYTGGLKDLQEGTIRLIGDPETRYRED
PVRALRAVRFAAKLDMTISRETAEPIPRLGVLLHDIPPTRLFEEALKLLQAGYGEVTYHL
LCEYQLFQLLFPLISRHFTEHGDSYIEQMVIRVLANTDQRLRNDMRVNPAFLFAAMLWYP
LLEHVQKLTQESSLSYFDAFSLAMDEILDEQCRTLAIPKRLIALMRDIWQLQLRLSRCHG
KRAHKLVERPKFRAAYDLLVLRAEVEKSAELQKLSRWWREFQVAAPLQKKKMLAALSDEV
PTSSRPCHLYRRVPNCDST
NT seq
1320 nt
NT seq
+upstream
nt +downstream
nt
ttgacgattattccgcgcgacaagcataccatctcccgcaaggagatcagtgaaaacgca
ttaaaggttctttaccgcttgaaaaaagcagggtacgaagcctacttagttggcggcggc
gtgcgtgacctactgctgggtaaaaagcctaaagacttcgatatcactaccagtgcaacc
ccggagcagatgcgtaaattgtttcgaaattgtcgtctagtcggccgccgtttccggctg
gcccacgtcatattcgggtcagaaattattgaagtcgctaccttccgtggtcatcatcaa
gtagtaatgtctgaaaaaaatgttggaaaattagccctaaccggagacaacggcattctg
cttcgcgataatattttcggatccatcgaagaagatgcccagcgccgcgacttttctgta
aacagtctttattatagcgtgtccgatttcactctgcgggactataccggcgggcttaaa
gatttacaggaaggcacaattcgtctgattggcgatccggaaacccgctatcgggaagat
cctgtacgtgcactgcgcgcagtgcgctttgccgccaagctagacatgaccatcagtcgc
gaaactgccgaaccaattccccgcttgggtgtattgttacacgacattcctcccacgcgg
ctatttgaagaggcgctcaagctcttgcaagcgggctatggtgaagtcacttaccacctg
ctgtgtgaataccagctatttcaactgctgtttccgctgattagtcgtcactttacggag
cacggcgatagttatatagagcaaatggtcatccgcgttctagctaacaccgatcaacgt
ttacgcaatgatatgcgggttaatcctgccttcttatttgccgctatgttgtggtatccg
ctactggaacatgttcaaaaactaacccaggaaagcagtctgtcctatttcgacgcgttt
tctctagcgatggacgaaattctcgacgaacaatgtcgcacgttggccattccgaaacgt
ttaatcgccctgatgcgagatatatggcaactgcagctgcggctatctcgttgccatggt
aagcgcgcccataaactagtggaacgccccaaattccgcgcagcctatgatttactggtg
ctacgagccgaagtcgaaaagagcgctgaactacagaaacttagtcgttggtggcgtgaa
tttcaagtcgccgcacctcttcaaaaaaagaagatgcttgccgctcttagcgatgaagtg
ccaaccagttcccgaccgtgccatctatatcgtcgagtacctaattgcgacagcacttaa
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