Devosia sp. H5989: XM25_07235
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Entry
XM25_07235 CDS
T04003
Name
(GenBank) Excinuclease ABC subunit A
KO
K03701
excinuclease ABC subunit A
Organism
deq
Devosia sp. H5989
Pathway
deq03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
deq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
XM25_07235
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
deq03400
]
XM25_07235
DNA repair and recombination proteins [BR:
deq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
XM25_07235
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
XM25_07235
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrA_DNA-bind
UvrA_inter
ABC_tran
SMC_N
AAA_16
AAA_29
AAA_21
DnaJ_CXXCXGXG
nSTAND1
BCA_ABC_TP_C
RsgA_GTPase
AAA_33
CA109-like
Motif
Other DBs
NCBI-ProteinID:
AKR55597
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All DBs
Position
1519677..1522562
Genome browser
AA seq
961 aa
AA seq
DB search
MPDANNREIVIRGAKEHNLKSVDLRLPRDKLIVMTGLSGSGKSSLAFDTIYAEGQRRYVE
SLSAYARQFLEMMQKPDVEQIDGLSPAISIEQKTTSRNPRSTVGTVTEIYDYLRLLYARV
GIPYSPATGLPIESQTVSQMVDKVLALPEGTRLYLLAPMIRGRKGEYKRELNDLMRKGFQ
RVKIDGEFYDIEDAPSLDKKLKHDLEVVVDRLVVSPDIASRLAESFETALKLADGIALVE
YADEKEADGSAKSITFSEKFACPVSGFTIAEIEPRLFSFNNPFGACPVCDGLGTERKIDP
DLVVPDASLSLRDGAILPWSKTSAPYYLQTLEAVARHYGASTGSAWEDLSDDVRQALLYG
TGKTPINFVYDDGLRTYKTTKPFEGVIGNLERRYKETESAGMREEIERYMSSAPCVACNG
YRLKPEALAVKINGLHIGQVTEKSIRNASDWFKELPRHLNDNQRTIGERVLKEIRERLDF
LNDVGLDYLTLARNSGSLSGGESQRIRLASQIGSGLTGVLYVLDEPSIGLHQRDNERLLE
TLRRLRDLGNTVIVVEHDEDAILTADYVVDIGPGAGVHGGHIVAEGTPQDIIDNPDSITG
AYLSGRMGIPLPAERREPSKTRKLSLKGATGNNLKDVSVDVPLGLFVAITGVSGGGKSTL
MIDTMYQAIARRLNGARVVPAPHEALTGLEFLDKVIDIDQSPIGRTPRSNPATYTGAFTP
LREWFAGLPEAKARGYGPGRFSFNVKGGRCEKCEGDGVLKIEMHFLPDVYVTCDVCKGKR
YNRETLEVQFKGKSISDILDMTIDEGVEFFAAVPSIRDKLVTLQRVGLGYVKIGQPATTL
SGGEAQRVKLSKELSKRATGRTLYMLDEPTTGLHFHDVAKLLEVLHELVEGGNTVVVIEH
NLEVIKTADWIIDMGPEGGDGGGEVVGVGTPEDVAANPRSYTGAFLKEVMARRPPRSQAA
E
NT seq
2886 nt
NT seq
+upstream
nt +downstream
nt
atgcccgacgccaacaatcgtgaaatcgtcatccgcggtgccaaggagcacaacctcaag
tccgttgacctgcggctgccgcgcgacaaactgatcgtgatgacgggcctgtcgggttcg
ggcaagtcctccctggcgttcgacaccatctatgccgaaggccagcggcgctatgtggag
agcctctcggcctacgcccgccagttcctggaaatgatgcagaagcctgatgtcgagcag
atcgacgggctctctccggccatctcgatcgagcagaagaccacctcgcgcaatccgcgc
tcgaccgtgggcaccgtcaccgagatctatgattacctccgcctgctctacgcgcgcgtc
ggcatcccctattcgcccgccaccggccttcccatcgagagccagactgtctcccagatg
gtggacaaggttctcgccctgcccgaaggcacgcgtctctacctcctcgcgccaatgatc
cgcggccgcaagggcgagtacaagcgcgaactcaacgacctgatgcgcaagggcttccag
cgcgtcaagatcgacggtgagttctacgacatcgaggacgcgccgagcctcgacaagaag
ctcaagcacgaccttgaagtcgtggtcgaccgtctggtcgtttcccctgacatcgcttcg
cgcctggccgaaagcttcgagacggcgctcaagcttgccgacggcatcgcgctggtcgaa
tacgccgacgagaaggaggccgatggttcggccaagagcatcaccttctcggaaaaattc
gcctgcccggtttccggcttcacgattgccgagatcgagccacgcctcttctcgttcaac
aacccgttcggcgcctgtccggtatgcgacggcctgggcaccgagcgcaagatcgacccg
gaccttgtggttccggacgcatcgctctcgctgcgcgacggcgccatcctgccatggtcc
aagacttcggctccctactacctgcagacgctcgaagcggtggcgcggcactatggcgcc
tccaccggatctgcctgggaggatctctccgatgacgtgcgccaggccctgctctacggc
accggcaagacgccgatcaatttcgtctacgacgacggcctgcgcacctataagaccacc
aagcccttcgaaggtgtgatcggcaacctcgagcgccgctacaaggaaaccgaatccgcc
ggcatgcgcgaagagatcgagcgctatatgtcctcggcgccgtgcgtcgcctgtaacggc
tatcgcttgaagcccgaggccctggcggtcaagatcaacgggctccacatcggccaggtg
accgaaaagtcgatccgcaacgcctcggactggttcaaggagctgccccggcacctcaac
gacaaccagcgcaccatcggcgagcgcgtcctcaaggaaatccgcgagcgcctggatttc
ctaaacgacgtcggcctcgactatctgaccctggcccgcaactccggctcgctctcgggc
ggcgaaagccagcgcatccgcctggccagccagatcggttcgggcctcaccggcgtgctc
tacgttctcgacgagccctcgatcggcctgcaccagcgcgataacgaacgcctgctcgaa
accttgcgccggctgcgcgacctcggcaacaccgtgatcgtggtcgaacacgacgaagac
gccatcctgaccgcggactacgttgtcgatatcggcccgggcgccggcgtccatggcggc
catatcgtggctgaaggcaccccacaggatatcatcgacaatccggacagcatcaccggc
gcctatctttcgggccgcatgggcatccccctgcccgccgagcgccgcgagccgtccaag
acccgcaaactctcgctcaagggcgcgacgggcaacaacctcaaggatgtctcggtcgac
gttccactgggcctgttcgttgccatcaccggcgtctcgggcggcggcaagtcgacactg
atgatcgacaccatgtaccaggccatcgcgcgccgcctcaacggcgctcgcgtggtgccg
gcgccccacgaggcgctgactggcctggagttcctcgacaaggttatcgatatcgaccag
agccccatcgggcgcacgccccgctcgaaccccgccacctataccggcgccttcacgccg
ctgcgcgagtggttcgccggactgccggaagccaaggcccgcggttacggcccggggcgc
ttctccttcaacgtcaagggcggacgctgcgagaagtgcgagggcgatggcgttctcaag
atcgagatgcacttcttgcccgatgtctacgtcacctgcgacgtctgcaagggcaagcgc
tacaaccgcgagacgctcgaggtccagttcaagggcaagtcgatctccgatatcctcgac
atgaccatcgatgagggcgtggagttcttcgccgccgtgccctcgatccgcgacaagctg
gtgacgctccagcgcgtcgggctgggttacgtcaagatcggccagcccgccacgaccctc
tcgggcggcgaagcccagcgcgttaagctctccaaggagttgtccaagcgcgccaccggc
cgcacgctctacatgctggacgaacccacgactggcctgcacttccacgatgtggccaag
ctgctcgaagtcctgcatgaactggtcgagggcggcaacacggtggtcgtcatcgagcac
aacctcgaggtcatcaagacggccgactggatcatcgatatgggcccggagggcggcgac
ggcggcggcgaagttgtcggcgtcggcacgcccgaagatgttgcagccaatccaagatct
tacacgggcgccttcctcaaggaagtcatggcgcgccggccaccgcgaagtcaggcggca
gagtga
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