Cavenderia fasciculata (cellular slime mold): DFA_01983
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Entry
DFA_01983 CDS
T02668
Name
(RefSeq) hypothetical protein
KO
K06173
tRNA pseudouridine38-40 synthase [EC:
5.4.99.12
]
Organism
dfa
Cavenderia fasciculata (cellular slime mold)
Brite
KEGG Orthology (KO) [BR:
dfa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
dfa03016
]
DFA_01983
Enzymes [BR:
dfa01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.12 tRNA pseudouridine38-40 synthase
DFA_01983
Transfer RNA biogenesis [BR:
dfa03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
DFA_01983
Prokaryotic type
DFA_01983
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PseudoU_synth_1
CCD97-like_C
Motif
Other DBs
NCBI-GeneID:
14873357
NCBI-ProteinID:
XP_004359944
UniProt:
F4PR36
LinkDB
All DBs
Position
Unknown
AA seq
604 aa
AA seq
DB search
MEGDSSSTVAPVLVVTENNNEQQKQLKRNHPEEEAANNTDEKKVVDDLKDTTTATVVGGV
VDEQKVDITKGRNYHDKEAFIQQGRIKRLKHDEKFKSSPTSSVSQEKRDIDRERSLKYKN
EEMEKHIQLCNAFYNENKEVVDKNSSSETKRQKTPVAMLFSYVGTGHFGLEYTYEEKYPA
LENYLEKALFLSGMILPTNFGDVTRIKWSRSSRTDKGVHSLSTIIGASILINREKIQTKE
GVRAYIDQINSYLPPTLHIVSMATTSRSFMPRRQTSSRTYHYVLPKKFLGNQFTLQEINE
KILSLFIGTNSYHNFTTLRKTYSSILINQQQQQQQQNQNNQNNKNNNKNNNKNNKKKKKN
RGKNNQSDDEDDESEEEEEEEEELEEEKVKEQQQQQKKVINRVDEMNFYKTNVKNCRKIH
SFTIGETFLVESNDQQQEEWVKFMIEGESFIQYQIRKMVGFVLAVCHGLVDVKILEIALK
GPFSINSPIAPPDTLYLYDCRVNERKSDVLYNVFSMETKEEIQKDKNLFCSKQLYPHLNQ
LNNQKKFFESFIEKALPSHYFSTEEENLDDLNKLFLQSREIREQKIAFMRQREKLLQEEE
EGQQ
NT seq
1815 nt
NT seq
+upstream
nt +downstream
nt
atggaaggtgatagttcaagtaccgtagcaccagtattagtagtaactgaaaataataat
gaacaacaaaaacaattaaaaagaaatcatccagaagaagaagcagcaaacaacactgat
gaaaagaaagtagtagatgatctaaaagatacaacaacagcaacagtagtaggaggagta
gtagatgaacaaaaagtagatattacaaagggtagaaactatcatgataaagaagcattc
attcaacaaggtagaatcaaaagattaaaacacgatgaaaagtttaaaagttcaccaaca
tcatcggttagtcaagaaaagagagatatcgatagagaacgttcattaaagtacaagaat
gaagagatggagaaacacatccaactgtgtaacgcattctacaatgaaaacaaagaggtg
gtcgacaagaattcatcgtcagagacaaaacgacaaaagacaccagttgctatgctcttt
agttatgttggtaccggtcactttggtctagagtacacctatgaagaaaagtatcctgca
ttagagaattatttggaaaaggctctctttctctctggtatgatccttccaaccaacttt
ggtgatgtcactcgtatcaaatggtctcgatcaagtagaaccgacaagggtgtacactcg
ctatcaaccatcatcggtgcatccattctcatcaatcgtgaaaagatccaaaccaaagaa
ggtgtgcgtgcctatatcgatcaaatcaattcttatcttccaccaactcttcacattgtc
tcaatggccaccacctctagatcattcatgccaagacgtcaaacttcaagtcgtacctat
cactatgtattgccaaagaaattccttggcaatcaattcacattgcaagaaatcaatgaa
aagatactttcactattcatcggtacaaatagttatcacaactttactactcttagaaaa
acttattcttcaattttaattaatcaacaacaacaacaacaacaacaaaatcaaaataat
caaaataataagaataataataagaataataataagaataataagaaaaagaagaaaaat
agaggtaaaaataatcaaagtgatgatgaagatgatgaaagtgaagaagaagaagaagaa
gaggaagaattggaggaagaaaaagtaaaagaacaacaacaacaacaaaaaaaggttata
aatagagttgatgaaatgaatttttacaagacaaatgtaaagaattgtagaaagatacat
tcctttacaattggcgaaacatttttggtagaatcaaatgatcaacaacaagaggaatgg
gtcaaatttatgattgaaggtgaatcttttattcaatatcaaatcagaaagatggttggt
tttgttttggctgtttgtcatggtttggttgatgttaaaatattagagattgcattaaag
ggaccattctcgatcaattcaccaattgctccacccgatacattgtatctctacgattgt
cgtgtcaatgaacgcaaatcagatgtcctatacaatgtattttcaatggaaaccaaagaa
gaaatacaaaaagataagaatttattttgttcgaaacaactgtatccacacttgaaccaa
ttaaacaatcaaaagaaattctttgaatcttttatcgaaaaggctttaccatcacattac
tttagcacagaggaagaaaacttagatgacctcaacaaacttttccttcaatcaagagaa
attagagaacaaaaaatagcttttatgagacaaagagaaaaattacttcaagaagaagaa
gaaggccaacaataa
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