KEGG   Desulfurococcus amylolyticus DSM 16532: Desfe_0650Help
Entry
Desfe_0650        CDS       T02136                                 

Definition
(GenBank) DNA ligase I, ATP-dependent Dnl1
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
dfd  Desulfurococcus amylolyticus DSM 16532
Pathway
dfd03030  DNA replication
dfd03410  Base excision repair
dfd03420  Nucleotide excision repair
dfd03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:dfd00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    Desfe_0650
   03410 Base excision repair
    Desfe_0650
   03420 Nucleotide excision repair
    Desfe_0650
   03430 Mismatch repair
    Desfe_0650
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:dfd03032]
    Desfe_0650
   03400 DNA repair and recombination proteins [BR:dfd03400]
    Desfe_0650
Enzymes [BR:dfd01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     Desfe_0650
    6.5.1.6  DNA ligase (ATP or NAD+)
     Desfe_0650
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     Desfe_0650
DNA replication proteins [BR:dfd03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    Desfe_0650
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     Desfe_0650
DNA repair and recombination proteins [BR:dfd03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     Desfe_0650
   NER (nucleotide excision repair)
    Other NER factors
     Desfe_0650
   MMR (mismatch exicision repair)
    Other MMR factors
     Desfe_0650
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C DNA_ligase_OB_2 GGGtGRT
Motif
Other DBs
NCBI-ProteinID: AFL66551
UniProt: I3XRH7
LinkDB All DBs
Position
complement(617140..618972)
Genome map
AA seq 610 aa AA seqDB search
MSTGRTDIPVRLIADVFERIEVITSRIQMTALLVTLFKQTPPEIIDRVVYLIQGRLWPDW
KELPELGVGEKLLVKAIALATNSSEAQVEDLAKSLGDLGKVAEQLKSRISGRQQGVTLFS
FTQQQPELTVNKVYDTLVRVAMAQGEGSKDLKIRLLAGLLREASPKEAKFIVRFVEGRLR
VGIGEATVMDALAITYGGGVAARQVIERAYNLRADLGKVAKILALNGLEALRNVRPEVGV
PIRPMLAERLSDPKEILEKVGGDAFIEYKYDGERAQIHKKDDKVWIFSRRLENITHQYPD
VVELARDHLKAREVIVEGEIVAYDLDTGELKPFQELMHRKRKHEVRTVLKEYPVKVFLFD
LLYADGRDYTIEPLPVRRGKLLEIVDRTEEFTVAEYIRTSDVKELEKFFLKAISDGAEGV
MVKALHDGSIYQAGTRGWLWIKFKRDYRSEMIDTVDLVVVGAFYGKGRRGGKYGALLMAA
YNDEKDVFETVCKVGSGFKDEDLDKLPEILKPYIRDRKSPRVVAEMEPDVWVEPALVAEI
IGAELTLSPIHTCAYGRIKSDAGLSIRFPRFIRWRPDKRPEDATTSNELVEMYNQQLKKI
AGESKPVEEA
NT seq 1833 nt NT seq  +upstreamnt  +downstreamnt
atgagtactgggcggacagatatcccggtaaggcttatcgccgatgtattcgagcgtata
gaggtaataacctcaaggatccagatgaccgcgctactggtcactctattcaagcagacc
ccaccagagatcattgatcgcgttgtctatctaatacagggcaggctatggcctgactgg
aaagaactcccggagctcggggtaggcgagaagctactggttaaagctatagctctggct
acgaacagtagtgaggcacaggttgaagacctagctaaaagcctcggcgaccttggtaaa
gtagccgagcaattaaaatcaaggatcagcggtagacagcaaggcgtgacattattcagc
ttcactcagcaacaaccggaattaacggttaacaaagtatatgatacactagtaagggtg
gcgatggctcaaggcgagggaagcaaggatctgaaaataaggcttttagccgggctcctc
agggaggcctcacccaaggaggccaagttcatcgtgaggtttgtcgaaggcaggctaagg
gttggaataggcgaggcaacggtcatggatgccctagcaataacttatgggggtggggtg
gctgctagacaggttatcgagagagcgtataatctcagggcggatctcgggaaggtagcc
aagatacttgccttgaatgggttggaagccctcaggaatgttaggccggaggtcggggtc
cctataaggccaatgctggctgagaggctcagcgaccccaaggagatacttgaaaaggtg
ggtggggatgcattcatcgagtacaagtatgatggtgagagagcccagatacataagaag
gatgataaggtatggattttctccaggaggcttgaaaacataacccaccaataccccgat
gtcgttgaattagctagggatcacttaaaggctagagaagtcatcgtggagggtgagata
gtagcatacgacctggatacaggtgagttgaagcctttccaagagcttatgcatagaaag
agaaagcatgaggttcgcacagtacttaaggaataccctgtgaaggtcttcctgtttgat
ctattatatgcggatggacgggactataccatagaacccctcccagttaggaggggtaag
ctattggagatcgtggatagaacagaggagttcacggtggctgagtatataaggacgagc
gatgtaaaagagcttgaaaaattcttcttgaaagccataagcgatggagcggagggtgtt
atggttaaagccttacatgatggctcaatatatcaggctggtacaaggggctggctatgg
ataaagttcaagcgtgactacaggagcgaaatgatcgatacagtagacctagtcgtcgta
ggagccttctatgggaaggggaggagaggcgggaagtacggtgcactactcatggctgcc
tataacgatgagaaagacgtcttcgagacagtgtgcaaggtgggctccggattcaaggac
gaagacctagacaagctcccagagatactgaagccgtatataagagataggaagtcacct
cgcgtggtagccgagatggagcccgatgtatgggttgagccagcacttgtcgctgagatt
attggggccgaattgactctttcaccaatacatacatgcgcctacggcaggattaagagt
gatgcaggcttatccataaggttcccaagattcataaggtggaggcctgacaagaggcct
gaggatgctacaactagtaacgagctcgttgaaatgtataatcagcagttaaagaagata
gctggagagagtaagccggttgaggaagcctag

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