KEGG   Delftia sp. HK171: BO996_19460Help
Entry
BO996_19460       CDS       T04584                                 

Gene name
ligD
Definition
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
dhk  Delftia sp. HK171
Pathway
dhk03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:dhk00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    BO996_19460 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:dhk03400]
    BO996_19460 (ligD)
Enzymes [BR:dhk01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     BO996_19460 (ligD)
DNA repair and recombination proteins [BR:dhk03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     BO996_19460 (ligD)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S
Motif
Other DBs
NCBI-ProteinID: APE49851
LinkDB All DBs
Position
4390022..4392637
Genome map
AA seq 871 aa AA seqDB search
MPATRSKSQASRPARPTKGAAKAATPQASLALYRQKRDFTRTPEPSAESSSEAIAGQPGA
GALQFVIQKHWASHLHYDFRLELDGSMKSWAVPKGPSYDPADKRMAVQVEDHPMAYNRFE
GQIPPGQYGAGKVIIWDRGTWLPEGDAAEGYRKGKLKFELRGHKLQGRWTLVRMRGKDDA
KKPAWLLIKEHDGLERAASEFNLVDDMPDSVAGLPLPTATAPVTTPVATHVTASMPQSIA
PQLATLVDHAPADAGQWIFESKFDGYRLLARIEDGAVRLFTRNGKDWTTKMPALARAFAA
LPLQSGWVDGEVLMLDSDSRPDFQALQNAFDGERTDHLVFFAFDLLWQDGQDLRPQPVEQ
RRQQLQALLHKAPSDRLRFSEAFDAPPADLVAAACQLGLEGVIGKRRGSAYASRRSADWI
KLKCGLRQEFVIAGYTDPQGTRTGLGALVLAVHGKDGQLRAAGKVGTGFNRRTLADLRQR
LERLATGTSPLADSRGLGNGVHWVRPTLLAEVSFAQWTEDGQVRHAVFQGLRADKPARSI
VKEEPQHVPSTASSASAAATPGAARTQTRHARAARLPASMTITHPERVIDPSTGITKMDL
ARYYATVAPFMITHLKSRPVAMVRAPDGIEGELFFQKHLDQAPLQGIAALSPQLDPGHAP
LMEVSRREGLVAAAQMNTIEWHTWNARKDRIDRPDRMTFDLDPGEGVPWQQVQEAASLLH
VLLQELELPAFLKTSGGKGLHVVVPIKRLLDWDTVKAFSQAVVQHLAHAVPQRFVAKSGP
RNRVGKIFVDYLRNGFGATTACAWTARARPGMGISVPVAWNELDRLTGGAHWTIRSVDQR
LRLGNSPWEHYGTAAVGLGRAMKALGFESQR
NT seq 2616 nt NT seq  +upstreamnt  +downstreamnt
atgccggccacgcgcagcaagtcccaggcatcccgcccagcccgccccaccaaaggggcg
gccaaggcggcgacaccccaggcctcgctcgcgctgtaccggcaaaagcgcgacttcacg
cgcacaccggaaccttcggcagaatcttccagtgaggcgattgcagggcagcccggcgcg
ggcgccctgcaattcgtcattcaaaagcactgggccagccacctgcactacgactttcgg
ctggagctggacggcagcatgaaaagctgggccgtgcccaagggccccagctacgacccg
gccgacaagcgcatggccgtccaggtggaagaccacccgatggcctacaaccgcttcgag
ggccagattccaccgggacagtacggcgcgggcaaggtcatcatctgggaccgtggcacc
tggctgcccgagggcgatgcggccgaaggctatcgcaagggcaagctcaagttcgaactg
cgcggccacaagctgcagggccgttggaccctggtgcgcatgcgcggcaaggacgacgcc
aaaaagcccgcctggctgctgatcaaggagcacgacggcctggaacgtgctgccagcgaa
ttcaacttggtcgacgacatgcccgacagcgtggccggccttcccctgcccaccgccaca
gcgcccgtcaccacgcccgtcgctacgcacgtcaccgcgtccatgccgcagagcatcgcc
ccgcagctggcaaccttggtggaccatgcacctgcagatgccgggcaatggatcttcgag
agcaagttcgacggctaccggctgctggcgcgcatcgaggacggcgccgttcgccttttc
acgcgcaacggcaaggactggaccaccaaaatgcccgccctggcccgcgcctttgccgca
ctgcccctgcaatcgggctgggtggatggcgaggtgctgatgctggacagcgacagccgc
cctgacttccaggccctgcaaaacgcctttgacggcgagcgcaccgaccacctggtgttc
ttcgcgttcgacctgctgtggcaggacggccaggatctgcggccccagcccgtggagcag
cgccgccagcagttgcaggccctgctgcacaaggcgccttcggaccgccttcgtttcagc
gaggcctttgacgccccgcccgccgacctggtggccgccgcctgccagctgggcctggag
ggcgtgatcggcaagcggcgcggcagcgcctatgcctcgcggcgcagtgcggactggatc
aagctcaagtgcggcctgcgccaggaattcgtgatcgcgggctacaccgatccccagggc
acgcgcacgggcctgggcgccctggtcctggccgtgcatggcaaggacgggcagctgcgc
gcggcaggcaaggtgggcacggggttcaacaggcgcaccctggccgatctgcgccagcgc
ctggagcgccttgccaccggcacctcgccgctggcggacagccggggccttggcaatggg
gtgcactgggtgcgccccacgctgctggccgaggtctcgttcgcgcagtggaccgaggac
ggccaggtccgccatgccgtattccagggcctgcgtgcggacaagcctgcacgcagcatt
gtcaaagaggagccacagcacgtgccatcgaccgcatcttccgccagcgctgcagccacg
cctggcgctgcaagaacgcaaacccgccatgccagggcggcgcgactgcccgcctcgatg
accatcacccatcccgagcgggtcatcgatccctccaccggcatcaccaagatggatctg
gcgcgctactacgccacggtggcgcccttcatgatcacccacctcaagtcccggcccgtg
gccatggtgcgggcgccggacggcatcgagggcgagctgttcttccagaagcacctcgac
caggcgccgctgcagggcatcgccgccctgtcgccgcaactggaccccggccatgccccg
ctgatggaggtgtcccggcgcgaaggcctggtggcggcggcgcagatgaacaccatcgaa
tggcacacctggaacgcgcgcaaggaccgcatcgaccggcccgaccgcatgaccttcgac
ctggaccccggcgaaggcgtgccctggcagcaggtgcaggaggccgccagcctgctgcat
gtgctgctgcaggagctggagctgccggccttcctcaagaccagcggcggcaagggcctg
catgtggtcgtgcccatcaagcggctgctggactgggacaccgtcaaggccttctcgcag
gccgtggtccagcacctggcccatgccgtgccccagcgcttcgtagccaaaagcgggccg
cgcaaccgcgtgggaaagatttttgtggactacctgcgcaacggcttcggcgccaccacg
gcctgcgcgtggacggcccgtgcgcggccgggcatgggcatctccgtgcccgtggcctgg
aacgagctggacaggctcacgggcggcgcgcactggaccattcgctcggtagaccagcgc
ctgcgcctgggcaactccccctgggagcattacggcacggccgccgtgggcctgggccgc
gccatgaaggcgctgggcttcgagtcgcagcgctga

DBGET integrated database retrieval system