Diaphorobacter sp. HDW4A: G7047_23135
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Entry
G7047_23135 CDS
T06499
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
dih
Diaphorobacter sp. HDW4A
Brite
KEGG Orthology (KO) [BR:
dih00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
dih03016
]
G7047_23135
Enzymes [BR:
dih01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
G7047_23135
Transfer RNA biogenesis [BR:
dih03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
G7047_23135
Prokaryotic type
tRNA splicing ligases
G7047_23135
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
QIL82505
UniProt:
A0A6G8CV64
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All DBs
Position
complement(5032566..5033798)
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AA seq
410 aa
AA seq
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MSDNELNYNVAQVPNGVPIKMWTKGVPVEDEARNQLANTSRLPVVFKHIAAMPDVHLGIG
ATIGSVIPTIKAIIPAAVGVDIGCGMMAAKTTLRAHDLPDNLGPLRSAIERAIPHGFAPK
NRGRDPGAWDTPPDPVDVAWSGLVDEFNALCELHPRLANTNNRKHLGTLGSGNHFVEVCI
DQNDFVWFMLHSGSRGVGNAIGNHFIELAKKDAERNMRNLPDKDLAYFEEGAQYFGDYVR
GVSWAQKFAMKNREVMMTNLIAAVRKVISKPFESHVEAVNCHHNYVQKEHHFGEDVFVTR
KGAVSAKRGEMGIIPGSMGARSYIVRGLGNPESFESCSHGAGRVMSRTKAKKMFTVADQI
KATEGVECRKDADVIDEIPMAYKDIDAVMEAQKDLVEIVHTLKQVVCVKG
NT seq
1233 nt
NT seq
+upstream
nt +downstream
nt
atgtccgataacgaactgaactacaacgtggcacaggtgcccaatggcgtgccgatcaag
atgtggactaagggcgttcccgtggaagacgaggcgcgcaaccagctcgcgaacacctcg
cgcctgcccgtggtgttcaagcacatcgccgcgatgcccgacgtgcatctgggaatcggc
gccaccatcggctcggtgattcccacgatcaaggcgatcattcctgcggccgtgggcgtg
gatatcggctgcggaatgatggccgccaagaccacgctgcgagcgcatgacctgcccgat
aacctgggaccgctgcgctcggccatcgaacgcgcgattccgcatggctttgcgcccaag
aaccgtggacgtgatccaggcgcgtgggatacgccgcccgatcccgtggatgtggcgtgg
tccggtctggtggatgaattcaatgcgctgtgcgagctgcatccgcgccttgccaacacc
aacaaccgcaagcatctgggaacgctgggttcgggaaatcacttcgtggaagtgtgcatc
gatcagaacgacttcgtgtggttcatgctgcactcgggttcacgtggggtgggtaacgcc
atcggtaaccacttcatcgaactggcgaagaaagacgccgaacgcaacatgcgcaatctg
cccgacaaggatctggcgtactttgaggaaggtgcgcagtacttcggtgattacgtgcgc
ggtgtgtcctgggcgcagaagttcgcgatgaagaaccgcgaggtgatgatgaccaacctg
atcgccgctgtgcgcaaggtgatctccaaaccgttcgagtcgcacgtggaagcggtgaac
tgccaccacaactatgtgcagaaggaacaccacttcggtgaagacgtgttcgtgacgcga
aaaggcgcggtgagcgccaagcgcggtgagatggggatcatccctggaagcatgggcgca
cgtagctacatcgttcgcggcctcggaaaccccgagagcttcgagagctgcagccacggt
gcgggccgcgtgatgagccgcaccaaggccaagaagatgttcaccgtggccgatcagatc
aaggcgaccgagggcgtggaatgccgcaaggatgccgatgtgatcgacgagatcccgatg
gcctacaaggacatcgatgcagtgatggaggcgcagaaagacctggtggagatcgtgcat
acgctcaagcaggtggtttgcgtgaagggttga
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