KEGG   Dietzia sp. oral taxon 368: C3V38_02795Help
Entry
C3V38_02795       CDS       T05390                                 

Definition
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
dit  Dietzia sp. oral taxon 368
Pathway
dit03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:dit00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    C3V38_02795
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:dit03400]
    C3V38_02795
Enzymes [BR:dit01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     C3V38_02795
DNA repair and recombination proteins [BR:dit03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     C3V38_02795
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_M DNA_ligase_A_C RNA_ligase DNA_ligase_OB_2 DNA_primase_S
Motif
Other DBs
NCBI-ProteinID: AVM63489
UniProt: A0A2S0LT84
LinkDB All DBs
Position
559577..562189
Genome map
AA seq 870 aa AA seqDB search
MATKGQKESVKVDGRTVRFTHPDKVLYEATGTTKADVLEYYTAVAPLLITYAGNRPVTRK
RWPDGTDADSFFEKNLPQHAPDWVPRVSIEHSSRTVTYPVLDSPATLAWFAQQAALELHV
PQWTLTNGEPGRTRRIVIDLDPGEGVELDTTAKVALRVRDLLSEAGLEAFPVTSGSKGIH
LYARLDKAVTAASASKVAKEIAQSLAKQTPDLVTATMKRSIRDGKVFVDWSQNSGAKTTV
APYSLRGRAEPWVAAPRSWEELGDGGLTHLHWDEVLKRLDADGDLLDGLEGTVKKSGSAK
KKASSSGPTSRAKKSSGGKKSSSSSDDEDPEPADTSSTDVEGCDAEPTSADAVVTSLEEY
RRKRDRRKTPEPFEGEVETDRSGGDGPIFVIQEHHARRLHYDLRLEHHGVLASWAVPKNL
PTEPKDRRLAVHTEDHPLGYETFEGTIPKGEYGAGHMTVWDRGTYECEKWREDEIIVWLD
GEKVSGRYVLVRTSAEKNQWIVQYMKDQSPDSFYGGRDNPKSSYPDDDKRARGSGDSDSS
DGKARSRSTDRSDSAARPDAPPLPMIPTAAEVTELPDDTWAFEGKWDGYRVTLATDGAQT
RLVSRNGNSMDWLADGFPGLAEALERRAVLDAELVILDANGVPDFASLAKQAAAEGKDSS
LPPVELFVFDVLEVDGVDLQKQAWERRREVLDLLAPALREVDRVHVPEVLDGPGDRALAE
AEEYGWEGIVAKRRDSKYESGRRSKAWLKQKLLTTTEAVVGGWRPGKGGRSGSLGSLLLG
LPAETGLAYIGRVGTGFTDKQARALLDELEPLRRRTSPFVEQLPADARRDAVWVTPKIVV
EVRHQGFTDDGNMRQPSWRDIRRDKLPGDL
NT seq 2613 nt NT seq  +upstreamnt  +downstreamnt
atggcgactaaggggcagaaggagtcggtgaaggtcgacgggcgcaccgtgcgcttcacc
caccccgacaaggtgctctacgaggccaccggcaccaccaaggccgacgtgctggagtac
tacacggccgtcgcgccgctgctcatcacctatgccggcaaccggcccgtcacccgcaag
cgctggcccgacggcaccgacgccgactccttcttcgagaagaacctgccccagcacgcg
cccgactgggtgccgcgcgtgtcgatcgagcactcctcgcgcaccgtcacctaccccgta
ctcgactcccccgcgactctcgcgtggttcgcccagcaggccgccctcgaactgcacgtg
ccgcagtggaccctcacgaatggcgagccggggagaacgcggcggatcgtcatcgacctc
gacccgggtgagggcgtggaattggatacgacggcgaaggtcgccctccgcgtccgagac
ctgctgtccgaagcgggactcgaggcgttcccggtcaccagcggctccaagggcatccac
ctctacgcccggctggacaaggccgtcaccgccgccagcgcctccaaggtggccaaggag
atcgcgcagtccctcgccaagcagaccccagacctggtcaccgccaccatgaagcgctcc
atccgcgacggcaaggtgttcgtcgactggagccagaacagcggcgccaagaccaccgtc
gcgccgtactccctgcgcgggcgggccgagccgtgggtggccgcgccccgctcgtgggag
gaactcggcgacggcggcctgacgcacctgcactgggacgaggtgctcaagcgactggac
gccgacggcgatctcctcgacggcctcgaaggcacggtcaagaagagcggctccgccaag
aagaaggcgtcctcgtccggcccgacgtcgcgggccaagaagtcgtccgggggcaagaag
agctcgtcgtcgtcggatgacgaggaccccgagcccgccgacaccagctcgaccgacgtc
gagggctgcgacgccgagcccaccagcgccgacgccgtggtcacgagtctcgaggagtac
cgccgcaagcgggatcgccgcaagacgcccgagccgttcgagggtgaggtggagaccgat
cgctcagggggcgacgggcccatcttcgtcatccaggagcaccacgcgcgccgcctgcac
tacgacctgcggctcgaacaccacggcgtcctggcctcgtgggccgtgcccaagaacctg
cccaccgagcccaaggaccggcggctcgccgtgcacaccgaggaccacccgctcggctac
gagacgttcgagggcaccatccccaagggcgaatatggcgccggccacatgaccgtctgg
gaccgcggcacctacgagtgcgagaagtggcgcgaggacgagatcatcgtgtggctcgac
ggcgagaaggtctccggcaggtacgtactcgtgcgcacgagcgccgagaagaaccagtgg
atcgtgcagtacatgaaggaccaatcgcccgactccttctacggcgggcgcgacaatccg
aagtcgtcgtacccggacgatgacaagcgtgcgcgcggctccggcgactccgatagttcc
gacggcaaggcacgttcgcgttccaccgaccggtccgacagcgccgcgcgccccgacgct
cccccgctgcccatgatccccacggccgccgaagtgaccgaactgcccgacgacacgtgg
gcgttcgagggcaagtgggacggctaccgcgtcaccctcgcgaccgacggcgcacagacg
cgcctcgtcagccgcaacggcaactccatggactggctcgccgacggcttccccgggctg
gccgaagcgctcgagcggcgggcggttctcgacgccgagttggtgatcctcgacgccaac
ggcgtgccggacttcgcgtcactggccaagcaggccgccgccgagggcaaggactcgtca
ctgccgccggtcgagctgttcgtctttgacgtgctcgaggtcgacggcgtggacctgcag
aaacaggcgtgggagcgccgccgtgaggtgctggacctgctcgcgccggcactgcgggag
gtcgatcgagtgcacgtgccggaggtcctcgacggccccggtgaccgcgccctggccgag
gccgaggaatacggctgggagggcatcgtcgccaagcgccgcgactcgaagtacgaatcc
ggccgccgttccaaggcctggctcaagcagaagctgctcaccacgaccgaggccgtcgtc
ggcggatggcggcccggcaagggtggccgctccggctcgctcggctccctcctactgggc
ctgcccgccgaaaccggcctcgcctacatcggccgcgtcggcaccgggttcaccgacaag
caggcccgcgccctgctcgacgagctcgagccgctgcgccgcaggaccagccccttcgtc
gagcaactgcccgcagacgcccgccgcgacgccgtctgggtgacgcccaagatcgtcgtg
gaagttcgccaccagggcttcaccgacgacggcaacatgcgccaaccctcctggcgcgac
atccgccgcgacaagctgcccggagacctgtag

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