KEGG   Dyella jiangningensis: CH75_08290Help
Entry
CH75_08290        CDS       T03074                                 

Definition
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
dji  Dyella jiangningensis
Pathway
dji03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:dji00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    CH75_08290
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:dji03400]
    CH75_08290
Enzymes [BR:dji01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     CH75_08290
DNA repair and recombination proteins [BR:dji03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     CH75_08290
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S RNA_ligase
Motif
Other DBs
NCBI-ProteinID: AHX13229
UniProt: A0A023NS91
LinkDB All DBs
Position
complement(1756748..1759306)
Genome map
AA seq 852 aa AA seqDB search
MSLRDYERKRRFDRTPEPRPEGSAIGTGRELFVVQLHHARRRHYDFRLQVGDVLKSWACP
KGPSYDPAVKRLAVEVEDHPVSYAAFQGDIPDGYGAGHVDTFDTGVWSAFGDPEEQLQKG
HLRFELFGQRLKGRWHLVRSHRAEKKPTWFLIKDQDAYASDVEADDLLDTAMVKSTQRAA
GKSGGAKEVAEKLKRTRRKAAPTTRHRRASPATWIGKIPGARKHALPAGFFKPELATLRT
SPPTGDLWLNEVKWDGYRILTTISDGTVELWSRNGLSWTEKLPEMRQAIEALGLSTGRLD
GELIAISDGRPDFNALQQTLSGERASPLLYMLFDMPYLEGFDLSRTALVDRKHALERLLE
DAPPQLRYSTHVVGHGEQVFQNASDNRLEGIMCKRADSPYRSGRGDDWVKVKRLESDEFA
VVGYTAAKGSRKGFGSLLLAKPAPDGDWTYMGRVGSGFSDDMLRDLTRSLAKAGTRVPSI
KHAGEAPRDAHWIPPTAVAEVFYRGIGNQGLLRQPSLKAMRLDKSPADLRSSDRGTDGGG
SDGRVKHMRTPVRRKQASRSEAIAITHPDREVYPGEGITKQDVADYYKAVMDWFLPGVLN
RPTSVIRWPNGIGKPSFFQKHIPTGGLKHVGSARLKEETGASAVYLYPESADSILELVQF
NAIEFHPWGAHVDNPDCADRVVFDLDPGPDVSWTRVKAAARLMRQLLDQLGLECFLRTTG
GKGLHVVVPLEPPSPWTQVKQFAQSFAQVLESMHPLEFIAVSSKARRSGKIYVDYLRNGR
GATAVASYSLRGRPGAPVAMPLRWSELGKLKSASQFNIKTAVARLKRQRSDPWEGIDKVR
QSLDAVIKSLSS
NT seq 2559 nt NT seq  +upstreamnt  +downstreamnt
gtgtcgctgcgcgattacgaacgaaaacgacggttcgaccggacgcccgagccgcgccct
gagggttccgcgatcgggacaggccgcgagctgttcgtcgtgcagctgcatcacgcacgg
cgccggcactacgatttccggctgcaggttggcgacgtgctgaagagctgggcctgcccc
aaggggcccagctacgatcccgcggtgaaacgactggccgtggaggtggaagaccatccc
gtctcctatgccgcgttccagggcgatattcccgacggctacggcgccggtcacgtcgat
actttcgataccggcgtctggtcggcgttcggcgacccggaagaacaattgcagaagggg
cacctgcgctttgaacttttcggccagcggctcaagggccgctggcatctggtgcgcagc
catcgcgccgagaagaaacccacgtggtttctcatcaaggaccaggacgcctacgcctcg
gacgtggaggcggatgacctgctcgacaccgccatggtgaaaagcacgcagcgcgccgcg
ggcaagagcggcggcgccaaggaggtggccgagaaactcaagcgcaccaggcgcaaggcc
gcgccgaccaccaggcatcgtcgcgcgtctcccgcaacgtggatcgggaagattcctggc
gccaggaaacacgccctgcccgccggcttcttcaagcccgagctggccacgttgcggaca
tcaccgccgaccggcgacctgtggctcaacgaagtgaagtgggacggctatcgcatcctc
accacgatcagcgatggcaccgtcgagctgtggtcgcgaaacggtctttcctggaccgag
aaattgcccgagatgcgccaggccatcgaagcccttggtctttcgaccggccggctggac
ggcgagctcatcgccatttcggacggtcgccccgatttcaacgccctgcaacaaaccctc
tcgggcgaacgcgcctcgccgctgttgtacatgctgttcgatatgccgtatctggagggc
ttcgacctctcgcgcaccgcgctggtggatcgcaagcacgcgctcgagcgactgctggaa
gatgcgccaccccagctgcgctacagcacacacgtggtcggccacggcgaacaggtattc
cagaacgccagcgacaaccgcctcgagggcatcatgtgcaaacgcgccgactcgccctat
cgcagcggccgcggcgacgactgggtgaaggtaaagcgcctggagtcggacgagtttgcc
gtcgtgggctacacggccgccaagggctcccgcaagggcttcggttcattgctgctggcg
aagccggcgcccgatggcgactggacctacatggggcgcgtaggcagcggcttttccgac
gacatgctgcgcgatctcactcgctcgctggccaaggcaggcacgcgcgtgcccagcatc
aagcacgcgggcgaagcacccagggacgcgcattggatcccgcccaccgccgtggccgaa
gtcttctatcgcgggatcggcaatcagggcctgctgcgacagccaagcctcaaagcgatg
cgcttggacaagtcgcccgcggatctgcgcagcagcgatcgaggcaccgacggcggcggc
agcgacggccgtgtaaaacacatgcgaacgccggtgcgcaggaagcaggcaagccgtagc
gaggccatcgccatcacgcacccggatcgcgaggtctacccgggcgaagggatcaccaag
caggacgtggccgactattacaaggccgtgatggactggttcctgccgggcgtgttgaac
cgcccgacatccgtgatccgctggcccaacggcatcggcaagccgagctttttccagaaa
cacatccccacgggcggcctcaagcatgtgggctcggcgcgactcaaggaagaaaccggc
gcgtctgccgtctatctctaccccgagagcgccgattccatcctggaactcgtgcagttc
aacgccatcgaattccatccatggggcgcccacgtggacaaccccgattgtgccgatcgc
gtcgtgttcgacctggaccccgggccggatgtcagctggacgcgcgtcaaggccgcggcg
cggctgatgcgtcagctgctggatcaactcgggctggaatgttttcttcgcaccacaggg
ggcaagggcctgcacgtcgtcgtgcccctcgagccgccctcgccctggacgcaggtcaag
cagttcgcgcagagctttgcgcaggtgctggagtcgatgcatccgctcgagttcatcgcg
gtgagcagcaaggcccggcgcagcgggaagatctacgtggattatcttcgcaatggccgc
ggcgccaccgccgtggcgtcgtattcgctgcgcgggcgaccgggcgctccagtcgccatg
cccttgcgctggagcgagctgggcaagctcaagagcgcctcgcagttcaacatcaagacc
gccgtcgcgcgcctcaagcgccagcgctcggacccctgggaaggcatcgacaaggtgcgc
cagagtctcgacgccgtcatcaaatccctgtcgtcataa

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