Desulfofundulus kuznetsovii: Desku_0424
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Entry
Desku_0424 CDS
T01499
Name
(GenBank) ribonuclease, Rne/Rng family
KO
K08301
ribonuclease G [EC:3.1.26.-]
Organism
dku
Desulfofundulus kuznetsovii
Brite
KEGG Orthology (KO) [BR:
dku00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dku03019
]
Desku_0424
03009 Ribosome biogenesis [BR:
dku03009
]
Desku_0424
Messenger RNA biogenesis [BR:
dku03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Desku_0424
Ribosome biogenesis [BR:
dku03009
]
Prokaryotic type
rRNA processing factors
Desku_0424
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
TRAM
RNase_E_G_Thio
KH_1
DnaJ_CXXCXGXG
PSMbeta
Motif
Other DBs
NCBI-ProteinID:
AEG14048
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Position
443424..445106
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AA seq
560 aa
AA seq
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MFKEIVINAGEEETRVAVLEDRVLVEMYIERSFQQRLVGNIFRGRVENVLPGMQAAFVDI
GLDKNAFLYVEDALPPRGGNGFHHHGLGTSITDILKKGQDVIVQIVKEPIGTKGPRVTTH
VTLPGRYVVLMPTMDYIGISRRIEQERERERLKELAARFKPEGMGLIVRTVAEGVGEEDI
AQDVHMLTRLWHKILHRAGQGPVPNLIHRDLELIQRILRDVFTEDVDRLTVDSRSEYEKI
MELLDVTSPKLKYKVFLEERENIFQDYGIEQEIERALKRKVWLKCGGYLVIDQAEALTVI
DVNTGKYVGSTNLEDTVLKTNLDAAVEIARQLRLRNIGGIIIIDFIDMQQEGHRRQVLKV
LEEEIKKDKTRTNILGITQLGLVEMTRKKVRPSLSEVLQRPCPYCEGRGKVLSEETVGIH
FKNRIIELARRTSADTILVEAHPLVAARLIGSGGVNLRELEQKTGKNLYIRGSQGQHIES
VSIRPLYNKEEVIAHTLPVKPGQVLEVKVEEPHISNTNDGIARIDGFILDIEGAGSLVGE
TVPVEVSKVYRTYARARLVK
NT seq
1683 nt
NT seq
+upstream
nt +downstream
nt
ttgtttaaggaaattgtcattaatgcgggagaagaggaaacccgggtagcggtgctggaa
gaccgggtgctggtggaaatgtatattgaacgttcattccagcagcgcctggtgggtaat
attttccgcggccgggtggaaaatgttctgcccggtatgcaggcggcctttgtagacatt
ggtttggataagaacgcctttttatatgtggaggacgccctgccgccccgtggaggcaac
ggtttccatcatcacggactggggaccagcattaccgatatactaaaaaagggccaggat
gtgattgtccagattgttaaggaaccgattggcaccaaagggccgcgggtgaccacccac
gttaccctgcccgggcgttatgtggttctaatgcccaccatggattacatcggtatttcc
cggcgcattgaacaggagcgggaaagggaaagattaaaagagctggccgcccgcttcaaa
cctgaaggcatggggttaatcgtgcgtacggtggccgaaggggttggagaggaagacata
gcccaggacgtgcatatgcttacccggctctggcacaagatcctccaccgggccggtcag
ggaccggtgcccaacctgatccaccgggatctggagctgatccagcgtatcctgcgggac
gtttttaccgaggatgtggaccgcctgacggtggattcccgctccgagtatgaaaaaatc
atggaacttctggacgtcacttctccgaagctgaaatacaaggtgtttttagaagaaagg
gagaatatcttccaggactacggcattgaacaggaaatagaacgggcgcttaagcgtaaa
gtctggctcaagtgcggcggttacctggttatcgatcaggccgaggccttaaccgtgata
gatgtaaacacgggcaagtatgtaggtagcaccaatctggaggacacggtgctgaaaacc
aacctggatgcggcagtggaaatagcccgccagctgcgcctgcgcaatataggcgggatc
atcattatcgacttcatcgacatgcagcaggaaggccaccggcggcaggttctaaaagtc
ctggaagaagagattaaaaaggacaagaccaggaccaacatcctgggcatcacccagtta
gggctggtggaaatgacccgcaagaaggtccgccccagcctgtccgaggtgttgcagcgc
ccctgcccttactgtgaggggcggggtaaggtgctctcagaggaaacggtgggcattcat
ttcaagaaccgcatcattgaactggcccggcgtaccagcgcggacaccattctggtggag
gcccaccccctggtggctgcccggctaattggcagcgggggtgttaacctgcgggaattg
gagcagaaaacgggcaaaaacctgtacatccgcggttcccaggggcagcatatagaatcg
gtaagcatccggccgctctacaataaagaagaagttattgcccacactttgccggtcaag
cccggccaggtgctggaggtgaaggtggaagaaccccatatctccaacaccaacgatggg
attgcccgcattgacggctttatcctggacattgaaggagccggttccctggtgggcgaa
acggtgcctgtggaggtaagcaaggtctaccgcacctacgcccgggcccggctggtgaag
taa
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