Desulfofundulus kuznetsovii: Desku_2613
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Entry
Desku_2613 CDS
T01499
Name
(GenBank) 2'-5' RNA ligase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
dku
Desulfofundulus kuznetsovii
Brite
KEGG Orthology (KO) [BR:
dku00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
dku03016
]
Desku_2613
Enzymes [BR:
dku01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
Desku_2613
Transfer RNA biogenesis [BR:
dku03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
Desku_2613
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Gene cluster
GFIT
Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
AKAP7_NLS
Motif
Other DBs
NCBI-ProteinID:
AEG16137
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All DBs
Position
complement(2595195..2595776)
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AA seq
193 aa
AA seq
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MGKTMRLFWAVNLPDTIKERLWEIQRQLQGTGADAKWVERENLHLTIHFLGEVEIALINA
LISAAQRVLLTQKTFSVQLGGLGVFPDPRRPRVLWTGVTGGGDELREIHRLVGEAMVPFG
IPLPGRPFSPHLTLARLRSPRGVPELMVRVRELGDACTHLGTVQVSSVDLMQSELTRGGP
IYTLMAQIRLEAR
NT seq
582 nt
NT seq
+upstream
nt +downstream
nt
atgggtaaaaccatgcggcttttctgggctgtaaaccttcccgacacaattaaagagcgg
ctttgggagatccaaaggcagttgcaaggaaccggggctgatgccaagtgggtggaaagg
gaaaacctgcatttaactatccactttctgggtgaagtggagattgccctgatcaatgcc
cttatttctgcggcccagagggtgttgcttacccaaaagactttttccgtgcagttgggt
ggtttgggcgtgttcccggatccccggcgtccccgggttctctggaccggtgtcaccggc
ggaggggacgagttgcgggaaatccaccggttggtgggcgaggccatggtgcctttcggg
atacctttgccgggtcgacccttttctccccacttaacgctggccaggttgcgttctccc
cggggggtgccggaattgatggtgcgggtgcgtgagcttggcgatgcctgcactcacctt
ggaacggttcaggtttcttcggtggatttgatgcagagcgagcttacccgcggcggtcct
atatataccttgatggctcaaattcgcctggaagcccgttaa
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