Dehalococcoides mccartyi BTF08: btf_1159
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Entry
btf_1159 CDS
T02475
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
dmc
Dehalococcoides mccartyi BTF08
Pathway
dmc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
dmc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
btf_1159
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dmc03400
]
btf_1159
Enzymes [BR:
dmc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
btf_1159
DNA repair and recombination proteins [BR:
dmc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
btf_1159
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
AroM
AAA_16
AAA_22
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AGG08235
LinkDB
All DBs
Position
complement(1071890..1075336)
Genome browser
AA seq
1148 aa
AA seq
DB search
MNLIGLLPLIDQSPSFNSLFESLDRGEADISVLDAGRGFSLAAVYRKLKCPMLVITSQPE
RARELLEQIAAYSGEEPGFLPDPSLLPYQRAVSDRNSSLEKMRLAGILGGFIRSGDARII
VTAVPALLQRYISPKVFEQSFVQVWTGLETEPQNLICRFQQLGYRQESIVEMPGTYSHRG
GILDIFPHTEDNPVRLEFFGNTLESLRNFDPQSQRSGKQVNELTISPASEIFHLGQLPRQ
ELKNKLDALLTDNLNPEFSRTLSADINHLQEGLKPEYPEFFAPLFNTSSILDYLPADALV
VLDEPASIEQAAFHLDNEAEELRSDRLSQGELPSVYPRPYFSWAEISEMLKTKKRLIMAS
FGRESESLKLEFASPDNYVGRLTSLYEKLPELKGHAGRVVIVSHQAARLTELLAEEGIST
NVQTDILKPPPSASLSLVQGILGAGWSLSGSLHVFTDAELFGFVKQRRLPSKRPVARKGV
VLDIKPGEFVVHIDHGVALFSGVSHMNRDGMDKEYLILQYAGGDKLYVPTDQMDRVNRFI
GSGDEPPSLHRLGTQEWQRAKEKASESAEETARELLEIYAKRELASGYAFSADTVWQQEM
EASFSYVETPDQLKALYDVKEDMEKPRPMDRLILGDVGYGKTEVAIRAAFKAVMDGKQVA
VLVPTTVLAQQHYTTFRERLATFPVKVEVLSRFRSQSEQKEVVENLEKGEVDICIGTHRL
LQADIKFKDLGLVVIDEEQRFGVAHKEFFKKLRAQVDVLTLSATPIPRTLHMSMVGVRDM
SIIETPPGERLPIKTVVAAFDERLIREAILREMERNGQVFFVNNRVMGINLLAERIQQLV
PEARIGIGHGQMAEEKLAAVMADFVRHELDVLVCTTIIESGVDVPNANTLIINRADRFGL
TQLYQLRGRVGRSSQLAYAYFLYEKEKRLSGDAEKRLKTIYEAAELGAGYGIAMKDLEIR
GAGTLLGVKQSGYINSVGFNLYTQMLSEAVAGLKATGSGLSKEEIRLKNMPAPKLDLPLD
AFIPEYYIQDLDLRLSIYQQLSALTSLAGVQEKEKELADRFGAMPPELENLLYSIRLRLL
AKKAHVDTIVTEGSQIVVRMLGGLIINKSLLEPLRAGVIAGRNQVAIEFQKIGDKWKEVL
EEVIWRLG
NT seq
3447 nt
NT seq
+upstream
nt +downstream
nt
ttgaaccttatcggtttgttgcctctaatagaccaaagtccttcatttaacagtctgttt
gaatctttagacaggggtgaagctgatatttctgttttagatgcggggaggggtttcagt
ttggcggcggtataccgcaagcttaaatgccccatgctggttatcacttcacagccggag
cgggccagggaactactggaacagatagccgcttacagcggggaagagccggggtttttg
cctgaccccagcctgttgccttaccagagggctgtttcagaccgtaattcctcactggaa
aaaatgcgtctggcaggcattttgggcggttttatccggagtggagatgcccggataata
gttacagctgtgccggctctgcttcagcggtatatatcccccaaagtatttgagcagtct
tttgtgcaggtctggacgggattggaaacagaaccccagaatcttatttgccgttttcag
caactgggataccgtcaggaaagcatagtagaaatgccgggaacatattcacatcggggc
gggatactggatatcttcccccataccgaagataacccggtaaggctggaatttttcggc
aatacgctggaaagtttgcgtaattttgaccctcaaagccagcgttcgggaaagcaagta
aacgagcttaccatcagccccgcaagtgaaatttttcatctggggcagttgccccgtcaa
gagcttaaaaacaagctggatgctttgctcactgataaccttaatcctgaattcagccgc
actctgtcggcagatataaaccacttgcaggagggtttaaaaccggaatacccggaattt
tttgcccctcttttcaatacctcaagcatacttgattatctgccggcggatgctctggta
gtgctggatgagcctgcctctatagagcaggcggcttttcatctggataacgaagccgaa
gaactgcgctcagatcgtctgtcacaaggtgagcttccttccgtttatccccgcccgtat
ttcagctgggcagagatatctgaaatgttgaaaaccaaaaagaggcttattatggcctct
ttcgggcgggagagtgagtctctgaagctggagtttgcttctccggataattatgtgggg
cgtttaaccagtttgtatgagaaactgccggaactgaaagggcacgcaggcagggtggtt
atagtcagccatcaggccgcccgtttgaccgagcttctggcggaagagggtatttccaca
aatgttcaaacagatattttgaaaccccctccgtctgccagtctaagccttgttcaaggg
atattgggtgcgggctggagtttaagcggtagcttgcacgtatttaccgatgccgaactt
tttggttttgtaaaacagcggcgtttgccctccaaacgtccggttgcccgcaagggagtg
gtgctggacataaagccgggtgaatttgtggtgcatatagaccacggggtagccctgttc
agcggggtcagccatatgaaccgtgacggcatggataaagaatacctgatactccagtat
gccggcggcgacaaactctatgtacccacagaccagatggacagggtaaaccgttttata
ggcagtggggatgaacccccgtctttgcaccggctgggtactcaggaatggcaaagggct
aaagaaaaggccagtgaatccgcggaagagactgcccgtgagctccttgagatttacgcc
aaacgtgaactggccagcggctatgctttttcggcagacaccgtctggcaacaggagatg
gaagcatcgttctcctatgtggaaacacctgaccagctgaaggccctgtacgatgtcaaa
gaagacatggaaaaaccccgccctatggacaggcttatactgggggatgtgggctacggt
aaaaccgaggtagctataagggcggctttcaaagcggttatggacggcaaacaggtagca
gttttagtgcctactactgtgcttgcccagcagcattacactacttttcgtgagcggctg
gccacttttccggtaaaagtagaggtgctaagccgattccgcagccagtccgaacagaaa
gaagtggttgaaaatctggaaaaaggcgaggtggatatctgcataggtactcaccgcctg
cttcaggcagatataaagtttaaagacttgggattagtagttatagatgaagagcaacgc
ttcggggtagcccacaaggaatttttcaagaaactgcgtgcccaggtagatgtgcttacc
cttagcgctacccccataccccgtactttgcacatgtctatggtgggagtgcgggatatg
agtattatcgaaactccgcccggtgaacgcctgcctataaagaccgtagtagccgctttt
gatgaacggctgatacgtgaagctatactgcgggaaatggaaagaaacgggcaggtattt
tttgtgaataaccgggtgatgggcataaatttgctggcagaacgtatccagcagcttgtt
cccgaagcccgcataggtatcgggcacgggcagatggctgaagaaaaactggcggccgta
atggctgattttgtgcggcatgaactggatgtgctggtatgtaccaccataatagaatcc
ggggtggatgtgccgaatgccaatacccttatcataaaccgggcagaccgcttcgggctt
acccagctttaccagttgcggggaagggtggggcggagttcccagctggcatatgcctat
ttcctgtatgaaaaagaaaaacgccttagcggcgatgctgagaaacgcctgaaaactatc
tatgaggcagctgaactgggggcaggctacggcattgctatgaaagacttggagatacgg
ggtgcgggaacactgcttggggtaaaacagtcagggtatataaattcagtcggtttcaat
ctgtatacccagatgctgtcagaggctgtggccgggctgaaagctacgggcagcgggctt
tcaaaagaggaaatacgcctcaagaacatgcctgcccccaagctggatttacctctggat
gcatttatacccgaatattatattcaggacctggatctcaggctttccatctaccagcag
ttatcggctttaaccagtctggcaggagttcaggaaaaagaaaaagaactggcagaccgg
ttcggggcaatgccgccggaacttgaaaacctgctttattcaatccgtctgcgtctgctg
gctaaaaaagcccacgtggatactatagtaaccgaaggcagccagatagtggtgcggatg
ctgggcgggctgataataaacaagtctttgcttgaaccgcttcgggcaggggttatcgca
gggcgtaatcaggtggctatagagtttcaaaaaattggtgataaatggaaagaggtactg
gaagaggtaatctggcgattggggtag
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