KEGG   Drosophila melanogaster (fruit fly): Dmel_CG3642
Entry
Dmel_CG3642       CDS       T00030                                 
Symbol
Clp
Name
(RefSeq) clipper
  KO
K14404  cleavage and polyadenylation specificity factor subunit 4
Organism
dme  Drosophila melanogaster (fruit fly)
Pathway
dme03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:dme00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    Dmel_CG3642 (Clp)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:dme03021]
    Dmel_CG3642 (Clp)
   03019 Messenger RNA biogenesis [BR:dme03019]
    Dmel_CG3642 (Clp)
Transcription machinery [BR:dme03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     Dmel_CG3642 (Clp)
Messenger RNA biogenesis [BR:dme03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     Dmel_CG3642 (Clp)
SSDB
Motif
Pfam: zf-CCCH zf_CCCH_4 zf-CCHC Torus zf-CCCH_3 zf-CCCH_2 zf-CCCH_4 zf-CCHC_3
Other DBs
NCBI-GeneID: 33259
NCBI-ProteinID: NP_477156
FlyBase: FBgn0015621
UniProt: Q9VPT8
LinkDB
Position
2L
AA seq 296 aa
MDILLANVSGLQFKAERDLIEQVGAIPLPFYGMDKSIAAVCNFITRNGQECDKGSACPFR
HIRGDRTIVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSRFNACHNKECPFLHIDPQ
SKVKDCPWYKRGFCRHGPHCRHQHLRRVLCMDYLAGFCPEGPSCKHMHPHFELPPLAELG
KDQLHKKLPTCHYCGELGHKANSCKQYVGSLEHRNNINAMDHSGGHSGGYSGHSGHIEGA
DDMQSNHHSQPHGPGFVKVPTPLEEITCYKCGNKGHYANKCPKGHLAFLSNQHSHK
NT seq 891 nt   +upstreamnt  +downstreamnt
atggacatccttttggccaacgtaagtgggctgcagttcaaggcggagcgggacctcatc
gagcaggtgggtgccatcccgctgccgttctacggcatggacaagtccattgcggcggtc
tgcaacttcatcaccaggaacggacaggagtgcgacaaagggagcgcctgtcccttccga
cacattcgcggggaccggacgatcgtgtgcaagcactggctgagaggactgtgcaagaag
ggcgaccagtgcgagttcctgcacgagtacgacatgaccaagatgcccgagtgctacttc
tactcgaggttcaacgcctgccacaacaaagagtgtccctttttgcacatcgacccgcag
agcaaggtgaaggattgtccgtggtacaagagaggcttctgccgccacggtccccactgc
cggcaccagcatctgcgccgtgtcctgtgcatggactacctagccggcttctgccccgag
ggcccgtcctgcaagcacatgcatccgcacttcgagctgcccccgctggcggaactgggt
aaggatcagctgcacaagaaactgcccacgtgccactattgcggcgagctgggccacaag
gccaactcgtgcaagcagtatgtgggcagcctggagcatcgcaacaatatcaacgcaatg
gatcactccggcggacactcgggcggctactctggacactccggccacatcgagggtgcc
gatgacatgcaatccaatcaccacagtcagccgcatggtcccggcttcgtcaaggtgccc
acgcccctggaggagatcacctgctacaagtgcgggaacaagggccactacgcgaacaag
tgtcccaagggtcacctcgccttcctctctaaccaacatagtcataagtag

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