KEGG   Desulfosporosinus meridiei: Desmer_2946Help
Entry
Desmer_2946       CDS       T02207                                 

Definition
(GenBank) ATP-dependent DNA ligase LigD polymerase module, ATP-dependent DNA ligase LigD phosphoesterase module
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
dmi  Desulfosporosinus meridiei
Pathway
dmi03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:dmi00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    Desmer_2946
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:dmi03400]
    Desmer_2946
Enzymes [BR:dmi01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     Desmer_2946
DNA repair and recombination proteins [BR:dmi03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     Desmer_2946
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_M DNA_ligase_A_C mRNA_cap_enzyme DNA_primase_S
Motif
Other DBs
NCBI-ProteinID: AFQ44835
UniProt: J7IT26
LinkDB All DBs
Position
complement(3064274..3066730)
Genome map
AA seq 818 aa AA seqDB search
MTEKLDEYNQKRNFTRTSEPEGITEVAQEGLRYVVQHHLARRDHYDFRLEWEGALLSWAV
PKGPSYDTRDKRLAIKVEEHPLEYRNFEGTIPRGEYGGGVVMLWDEGYWEPSGDVAEGLS
AGMLKFVLKGRRLKGKWALVRLKGKAGEKQDNWLLLKEKDEYANNAQGISEFTTSIRTGR
TMTEIEEGEEEKITKNPFSSTGVQLAQLVHTPPKGEDWLYELKYDGYRILAYIESNSVRL
ITRNGHDYTKRFQDVASSLTEWAVGRAIILDGEMAITDPAGKTDFQALQNYLKNPQGKNL
TYIVFDLLALDGTDLRGQRLIDRKERLADLMQDAPENLHYSRHVRGNGKESFRAACEGDM
EGIIGKKADSFYSGARNGDWIKLKCDKRQEFVIGGYTLSDKKTSGISSLLLGVYARGELV
YAGRAGTGLSEADIKKLEGEFAGLQRGESPFQCAPKPRSNERITWLEPELVAEIKFAEWT
ADHQLRQGSFKGLRRDKNPKDIRQETADEDREDNETLSPSAVKKTESLVEANTNGIIIEG
IKISNPDKVIFADSEITKLDVIRYYAQVAERMLPYVSHRILSIVRCPKGIAQACFYKKHP
VPGSKGIVTIPISTGSGEQEDYFYIEAPTGLIAEAQMGTLEFHIWGSRVEHLEEPDLMVF
DLDPDEGMDLSRVRQGVRDVKNILAELSLKSYLKTSGGKGYHVVVPLKPAVTWERFHDFA
RRVAEVMEQKWPDRYTSNVRKAKRTNKIFIDWIRNGRGATSIAPYSLRARNGAGVSMPIP
WAELDTVAPDDVNMAEALRRIGGSDPWQDFFRNNQQLK
NT seq 2457 nt NT seq  +upstreamnt  +downstreamnt
atgaccgaaaaactcgacgagtacaatcaaaaaagaaatttcaccagaacctcagaaccg
gaagggataacagaagttgcccaagagggtctgaggtatgtggttcagcaccatttggct
cgcagagatcactacgacttccgcctggaatgggagggagctttattgagctgggcagtg
cccaagggcccttcctatgatactcgtgacaagaggctggccataaaggtggaggagcat
cctttggaatacagaaactttgaggggacgattccccgaggggaatatggcggcggtgtg
gttatgctctgggatgaagggtactgggaaccctctggtgatgtagctgaaggactcagt
gccggaatgctgaagtttgttctgaaaggacgcaggcttaagggcaagtgggctctggtg
cgcttgaaagggaaagcgggggagaagcaggataactggctgttgcttaaagaaaaagat
gagtatgctaataatgcccaggggatttccgaatttaccaccagcatcagaaccggacgc
accatgacggaaattgaagaaggggaagaggaaaaaattacgaagaaccccttcagcagt
accggtgtacagttggcccaattagttcatacgcctcctaagggtgaggattggctttat
gagttgaaatacgatggctacagaatactggcctatattgaaagcaacagtgtccggttg
attaccaggaacggccatgattatacaaagagattccaggatgtcgcctcttcccttact
gaatgggcggtgggccgggcgataattctggacggcgaaatggccatcacggatccagca
ggcaagacggactttcaggccctgcagaactatctgaaaaatccccagggcaaaaacctg
acctatatcgtctttgacctcctggccctggatggaacagacctcaggggccagcgcctg
attgataggaaggaaagattggcagacttgatgcaggatgcccctgaaaatctccactac
agccggcatgtaagaggaaatggcaaagagagttttcgggcggcctgtgaaggggatatg
gaagggataatcggtaaaaaagccgattccttctatagcggagcaagaaacggggactgg
atcaagcttaaatgcgataaaaggcaggaatttgtgatcggagggtataccctttctgac
aaaaaaaccagcggaataagttccttgctcctaggcgtttatgcaaggggggaattagtc
tatgccggccgggccggcactggcttgagcgaagcggatataaaaaagctggagggcgaa
tttgctggcctacagagaggagagtcccctttccagtgtgcgcccaagccccgatccaat
gaaaggatcacctggctggaacctgaattggtggcggaaatcaaatttgccgaatggacc
gcagatcatcagttaagacagggcagcttcaaaggtctgcggagggataagaatcctaag
gatattagacaagaaacagcggatgaagatagagaggataacgaaacactgtctccatca
gctgttaaaaaaacggagagccttgtggaagcaaacaccaacgggatcatcatcgaagga
atcaagatttctaacccggacaaagtgatctttgccgactcggaaatcaccaaactggat
gtgatccggtattacgctcaggtggcagagcgtatgctgccctatgtgagccataggatt
ctcagcattgtccgctgtcccaaaggcatagcccaggcttgcttttataagaagcatccc
gttccgggaagcaaaggaattgtcactatccctatttctaccggcagcggagaacaagaa
gactacttttatattgaggcccccaccgggctgatcgctgaagcacaaatgggcaccctg
gaatttcatatctgggggagccgtgtggagcatctggaagaacctgacctgatggtattt
gatctggatcctgacgaaggaatggatctgagcagagtgcgtcaaggtgtgcgggatgtg
aaaaatattctggccgagctttccctaaaatcttacctcaagaccagtggcggcaaaggg
taccatgtagtcgtccccttaaaaccggccgtgacttgggagaggtttcacgattttgcc
aggcgcgttgccgaagtgatggaacagaagtggcctgatcgttatactagcaatgtgaga
aaggctaagcgtaccaacaagatcttcatcgactggattcgcaacggcagaggtgctacc
agcatagccccctattccctgagagctaggaacggagccggagtgtccatgcctatcccc
tgggctgaactggacacggtggctcctgacgatgtcaatatggcggaggccctccggagg
attggcggcagtgatccttggcaggatttttttcggaataatcagcagcttaaatga

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