Oceanidesulfovibrio marinus: E8L03_13750
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Entry
E8L03_13750 CDS
T06743
Symbol
rny
Name
(GenBank) ribonuclease Y
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
dms
Oceanidesulfovibrio marinus
Pathway
dms03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dms00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
E8L03_13750 (rny)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dms03019
]
E8L03_13750 (rny)
Messenger RNA biogenesis [BR:
dms03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
E8L03_13750 (rny)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
HDOD
KH_1
KH_2
KhpA-B_KH
Motif
Other DBs
NCBI-ProteinID:
QJT09932
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All DBs
Position
complement(3132541..3134103)
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AA seq
520 aa
AA seq
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MESIISILLIALGIIVGAAGGYALHRLLATKRLEDARELAKRIIEEARKEAVAHKKEVKL
QAHDEILAQKKEMEDELKEREREIKKRENKMLEKEERLEDRSEKVTQKEGEVLSLEKSLT
KKERKLEERDEEIGKLAEEQTKRLQEISGLTQEEARRRLMDDVESRSRHEAAMMVRQIET
EAKELALRKSQEVMATALQRYSGDFVAEQTVTTVALPSEDMKGRIIGREGRNIRALEAAT
GVDLIIDDTPETVILSAFSPLRRQVAKLALERLISDGRIHPARIEDVVRKVEQEMDVKLR
EIGEQATFDVGVHGIHPDIIRLLGQLQYRTSFSQNVLQHSLEVASLCGVMAAELKMDVKR
AKRAGLLHDIGKAVDHEVEGPHATIGADLAKKYNESKDIIHAIAAHHEDVPPQTAMAVLV
QAADSLSGARPGARKELLENYVKRLEDLENIATNFDGVSKAYAIQAGREIRVMVDSEAVD
DDNTYMLCKDISKSIEENLTYPGQIRVTVIRERRAVGYAK
NT seq
1563 nt
NT seq
+upstream
nt +downstream
nt
atggaatccatcatcagcattttactcatcgcattgggcatcatcgtgggcgcggcaggg
ggctacgctctccacaggctgctcgccacaaagcggctggaggatgcccgtgagcttgcc
aaacgcataatcgaagaggcgcgcaaggaagctgtggcccacaagaaagaggtcaagctt
caggcccacgacgagatactcgcccagaaaaaggaaatggaagacgagctcaaggagcgt
gagcgggagatcaagaagcgcgagaacaagatgctcgaaaaagaggagcgcctcgaagac
cgctcggaaaaggtcacccagaaggagggcgaggtcctctctctggaaaagagcctgacc
aagaaagagcgcaagcttgaagagcgggacgaggagatcggcaagctggccgaggagcag
accaagcggttgcaggagatctccggcctgacgcaggaagaggcgcgcaggcggcttatg
gacgacgtggagtcgcgcagccgccacgaggccgccatgatggtccggcagatcgagacc
gaggccaaggagctggccctgcgcaagtcccaggaagtcatggccaccgcgctgcagcgc
tactccggcgacttcgtggccgagcagaccgtgaccacggtcgccctgcccagcgaagac
atgaagggccgcatcatcggccgcgagggccgcaacatccgcgccctggaagccgccacc
ggcgtggatctgatcatcgacgacacgcccgagaccgtcatcctctcagccttcagcccg
ctccggcggcaggtcgccaagctcgccctggagcgcctcatctccgacggccgcatccac
ccggcgcgtatcgaagacgttgtccgcaaggtggagcaggagatggacgtcaagctgcgc
gagatcggcgagcaggccaccttcgacgtgggcgtccacggcatccatccggacatcatc
cggctgctgggacagctccagtaccgcaccagcttctcgcagaacgtgctccagcactcg
ctggaggtcgcctccctctgcggcgtcatggccgccgagctgaagatggacgtcaagcgc
gccaagcgcgccggactgctccacgacatcggcaaggccgtggaccacgaggtggaaggt
ccccacgccaccataggcgccgacctggccaagaagtacaacgagtccaaggacatcatc
cacgccattgccgcgcaccacgaggacgtcccgccccagacggccatggccgtgcttgtc
caggccgcggactccctgtccggagcccgccccggcgcgcgcaaggagctcctggagaac
tacgtcaagcggctggaggacctggagaacatcgccacgaacttcgacggcgtctccaag
gcctacgccatccaggccggtcgcgagatccgcgtcatggtcgactcggaggccgtggac
gacgacaacacttacatgctctgcaaggacatctccaagtccatcgaagaaaacctcaca
tatccgggccagatccgcgtcacggtcattcgcgaacgccgcgccgtgggctacgccaag
taa
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