KEGG   Oceanidesulfovibrio marinus: E8L03_13750
Entry
E8L03_13750       CDS       T06743                                 
Symbol
rny
Name
(GenBank) ribonuclease Y
  KO
K18682  ribonucrease Y [EC:3.1.-.-]
Organism
dms  Oceanidesulfovibrio marinus
Pathway
dms03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:dms00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    E8L03_13750 (rny)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:dms03019]
    E8L03_13750 (rny)
Messenger RNA biogenesis [BR:dms03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     E8L03_13750 (rny)
SSDB
Motif
Pfam: RNase_Y_N HD HDOD KH_1 KH_2 KhpA-B_KH
Other DBs
NCBI-ProteinID: QJT09932
LinkDB
Position
complement(3132541..3134103)
AA seq 520 aa
MESIISILLIALGIIVGAAGGYALHRLLATKRLEDARELAKRIIEEARKEAVAHKKEVKL
QAHDEILAQKKEMEDELKEREREIKKRENKMLEKEERLEDRSEKVTQKEGEVLSLEKSLT
KKERKLEERDEEIGKLAEEQTKRLQEISGLTQEEARRRLMDDVESRSRHEAAMMVRQIET
EAKELALRKSQEVMATALQRYSGDFVAEQTVTTVALPSEDMKGRIIGREGRNIRALEAAT
GVDLIIDDTPETVILSAFSPLRRQVAKLALERLISDGRIHPARIEDVVRKVEQEMDVKLR
EIGEQATFDVGVHGIHPDIIRLLGQLQYRTSFSQNVLQHSLEVASLCGVMAAELKMDVKR
AKRAGLLHDIGKAVDHEVEGPHATIGADLAKKYNESKDIIHAIAAHHEDVPPQTAMAVLV
QAADSLSGARPGARKELLENYVKRLEDLENIATNFDGVSKAYAIQAGREIRVMVDSEAVD
DDNTYMLCKDISKSIEENLTYPGQIRVTVIRERRAVGYAK
NT seq 1563 nt   +upstreamnt  +downstreamnt
atggaatccatcatcagcattttactcatcgcattgggcatcatcgtgggcgcggcaggg
ggctacgctctccacaggctgctcgccacaaagcggctggaggatgcccgtgagcttgcc
aaacgcataatcgaagaggcgcgcaaggaagctgtggcccacaagaaagaggtcaagctt
caggcccacgacgagatactcgcccagaaaaaggaaatggaagacgagctcaaggagcgt
gagcgggagatcaagaagcgcgagaacaagatgctcgaaaaagaggagcgcctcgaagac
cgctcggaaaaggtcacccagaaggagggcgaggtcctctctctggaaaagagcctgacc
aagaaagagcgcaagcttgaagagcgggacgaggagatcggcaagctggccgaggagcag
accaagcggttgcaggagatctccggcctgacgcaggaagaggcgcgcaggcggcttatg
gacgacgtggagtcgcgcagccgccacgaggccgccatgatggtccggcagatcgagacc
gaggccaaggagctggccctgcgcaagtcccaggaagtcatggccaccgcgctgcagcgc
tactccggcgacttcgtggccgagcagaccgtgaccacggtcgccctgcccagcgaagac
atgaagggccgcatcatcggccgcgagggccgcaacatccgcgccctggaagccgccacc
ggcgtggatctgatcatcgacgacacgcccgagaccgtcatcctctcagccttcagcccg
ctccggcggcaggtcgccaagctcgccctggagcgcctcatctccgacggccgcatccac
ccggcgcgtatcgaagacgttgtccgcaaggtggagcaggagatggacgtcaagctgcgc
gagatcggcgagcaggccaccttcgacgtgggcgtccacggcatccatccggacatcatc
cggctgctgggacagctccagtaccgcaccagcttctcgcagaacgtgctccagcactcg
ctggaggtcgcctccctctgcggcgtcatggccgccgagctgaagatggacgtcaagcgc
gccaagcgcgccggactgctccacgacatcggcaaggccgtggaccacgaggtggaaggt
ccccacgccaccataggcgccgacctggccaagaagtacaacgagtccaaggacatcatc
cacgccattgccgcgcaccacgaggacgtcccgccccagacggccatggccgtgcttgtc
caggccgcggactccctgtccggagcccgccccggcgcgcgcaaggagctcctggagaac
tacgtcaagcggctggaggacctggagaacatcgccacgaacttcgacggcgtctccaag
gcctacgccatccaggccggtcgcgagatccgcgtcatggtcgactcggaggccgtggac
gacgacaacacttacatgctctgcaaggacatctccaagtccatcgaagaaaacctcaca
tatccgggccagatccgcgtcacggtcattcgcgaacgccgcgccgtgggctacgccaag
taa

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