KEGG   Desulfitobacterium metallireducens: DESME_11395Help
Entry
DESME_11395       CDS       T03599                                 

Definition
(GenBank) DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
dmt  Desulfitobacterium metallireducens
Pathway
dmt03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:dmt00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    DESME_11395
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:dmt03400]
    DESME_11395
Enzymes [BR:dmt01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     DESME_11395
DNA repair and recombination proteins [BR:dmt03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     DESME_11395
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_C mRNA_cap_enzyme RNA_ligase TbpB_C
Motif
Other DBs
NCBI-ProteinID: AHF07542
UniProt: W0E9V2
LinkDB All DBs
Position
complement(2228813..2229745)
Genome map
AA seq 310 aa AA seqDB search
MKPIHPFEPVRTEKFPVGDNWIAQVKWDGVRILTYWDGNSVRLFNRKKNERTVQYPELTE
INTYCHAASLILDGEVIALEKGKPSFHKVMKRDGLRSMENLNWARRNVEINYIVFDVLFY
NGEWIISRTLEQRQHLLQKILRPAEGIYSADNFSNSASLFQAIQEQEMEGVVCKNLQSAY
VLGGKDARWKKIKNYRDLQAVIGGVTLRENQVNALLLGAYDPEGRLWYIGHAGSGKFTRA
EWNELTRQLLNLKQKNSPFINQPSRLQDAFWLEPQFTVKVKFMEWTEGGTLRQPSIQALI
RVSPHECLLE
NT seq 933 nt NT seq  +upstreamnt  +downstreamnt
atgaagcctatccatccttttgagccagtacgaacggaaaaattcccagtaggtgataac
tggatagctcaggtcaagtgggatggggtaaggatattaacctactgggatggaaattca
gttcgattgtttaatcgcaaaaagaatgaacggacggtacaatatccggaactgactgaa
atcaacacgtattgccatgctgcttctttaatcttagatggagaagtgattgccttggag
aaaggcaaaccatcctttcataaagtaatgaagagggatggtttaagaagtatggaaaat
ctgaactgggcgcgtcgcaacgttgagataaattacatcgtatttgatgttctcttttac
aatggagagtggattatttcacgaacactcgaacaaaggcaacatctactccagaagatc
ctgcggccagcggaaggaatttacagtgcagataatttttcgaatagcgcttctttattc
caggcgattcaggaacaagaaatggaaggcgttgtatgtaagaaccttcaatctgcttat
gttttaggaggcaaggacgcgcgttggaaaaagatcaagaattatcgagatcttcaagcc
gtcattgggggagtaaccttacgcgaaaatcaggttaatgccctgttgctgggtgcttat
gatcccgagggaaggctttggtatattggacatgccggaagcggcaaatttacacgagcg
gaatggaacgagttgacccgacagctcctaaatcttaagcagaagaacagtccttttatc
aatcaaccgtcgcgactacaagacgcattttggcttgaacctcagtttacggttaaagtg
aagtttatggaatggaccgagggaggaacacttagacaaccgagtattcaggcattaatc
cgagtttctcctcacgagtgcctactggagtga

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