KEGG   Desulfurococcus mucosus: Desmu_0663Help
Entry
Desmu_0663        CDS       T01406                                 

Definition
(GenBank) DNA ligase I, ATP-dependent Dnl1
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
dmu  Desulfurococcus mucosus
Pathway
dmu03030  DNA replication
dmu03410  Base excision repair
dmu03420  Nucleotide excision repair
dmu03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:dmu00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    Desmu_0663
   03410 Base excision repair
    Desmu_0663
   03420 Nucleotide excision repair
    Desmu_0663
   03430 Mismatch repair
    Desmu_0663
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:dmu03032]
    Desmu_0663
   03400 DNA repair and recombination proteins [BR:dmu03400]
    Desmu_0663
Enzymes [BR:dmu01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     Desmu_0663
    6.5.1.6  DNA ligase (ATP or NAD+)
     Desmu_0663
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     Desmu_0663
DNA replication proteins [BR:dmu03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    Desmu_0663
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     Desmu_0663
DNA repair and recombination proteins [BR:dmu03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     Desmu_0663
   NER (nucleotide excision repair)
    Other NER factors
     Desmu_0663
   MMR (mismatch exicision repair)
    Other MMR factors
     Desmu_0663
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase DNA_ligase_OB_2
Motif
Other DBs
NCBI-ProteinID: ADV64971
UniProt: E8R8Z5
LinkDB All DBs
Position
complement(661211..663043)
Genome map
AA seq 610 aa AA seqDB search
MSSRQADMPVGLLADVFERIEAITSRTQMTALLVGLFKQTPPEIIDRVVYLIQGRLWPDW
KGLPEIGVGEKLLVKAIALATGVTEASVEGLSKSLGDLGKAAEQLKSKSTGRSQGVTLLS
YTQQRTELTVNRVYETLVRVAMAQGEGSKDIKIRLLAGLLKEASPKEAKFIVRFVEGRLR
VGIGEATIMDALATIYGGGVAARPLIERAYNLRADLGEVAKILASKGLEAVKEVRPEVGT
PIRPMLAERLSDPGEILEKVGGDAFIEYKYDGERAQIHKKGDKVWIFSRRLENITQQYPD
VVELARNHLKADEAIVEGEIVAYDPETGELKPFQELMHRKRKHDIHSAIKEYPVKVFLFD
LLYLNGHDYTVETLPVRRSKLEEVVDKVEEFTIAEYIRTNKVDELEKFFLKAISEGAEGV
MVKALHGDSIYQAGTRGWLWIKFKRDYRSEMVDTVDLVVVGAFHGKGRRGGKYGALLMAA
YNDEKDVFETVCKVGSGFKDEDLDKLPEILKPYMRDRRHPRVVANMEPDVWVEPALVAEI
IGAELTLSPVHTCAYGKVKSDAGISIRFPRFIRWRPDKSPEDATTSNELVEMYQQQLKKI
TGETKPSEEA
NT seq 1833 nt NT seq  +upstreamnt  +downstreamnt
atgagtagtaggcaggcagacatgcctgtggggctcctcgccgatgtcttcgagcgcata
gaggcaataacctctagaacccagatgactgcactactagtcggcttattcaagcaaacg
cccccagaaatcatagacagggttgtctacctgattcagggcaggctgtggcccgactgg
aaagggctccctgagataggtgtcggcgagaagctgctcgtgaaagccattgccctggcc
accggtgtcacagaggccagtgtagaagggctttcaaagagcctcggcgacctgggtaag
gcggctgagcaattgaagtctaagagcactggtagatcccagggcgtcacactgctgagc
tacacgcagcagagaaccgagctaacagtcaacagggtgtatgagacgctggtgagggtg
gcaatggcccagggcgaggggagcaaggatataaagataaggttgctggccggcttactc
aaggaggcctcgcccaaggaagccaagttcatagtgaggtttgttgaggggcgtctacgg
gtcggtataggtgaggcaacgatcatggatgcgcttgcaacaatctacgggggcggggta
gcggcgaggccgttgatcgagagggcgtataatctaagagcagacctgggcgaggtagca
aagatacttgcttcgaaaggcctggaggctgtgaaggaagtgaggcctgaggttgggaca
ccgatacgccccatgctagctgagagactgagtgatccaggggagatccttgagaaggtt
ggaggagacgcattcatcgagtacaagtatgatggtgagagagcccagatacataagaag
ggcgacaaggtgtggatattttcaagaaggcttgaaaacataactcagcaataccccgat
gtagtcgagctcgccagaaaccatttgaaggctgacgaagcaatagttgagggagaaatc
gtcgcatacgacccggagacaggtgagttgaagcccttccaggagctcatgcataggaag
aggaagcatgatattcactcagcgatcaaggagtaccctgtgaaagtatttctcttcgac
ctcctgtaccttaatggacacgactacactgtggaaaccctcccggtcaggagaagcaag
ctcgaggaggtagtggataaagtagaggagttcacaatagccgagtacataaggaccaac
aaggtggatgagctggagaagttcttcttaaaggctataagcgagggagccgagggagtc
atggtgaaagctctccacggggactcaatataccaggctggcacaagaggctggctatgg
atcaagtttaaacgcgactacaggagtgaaatggttgacacagtggatctagtcgtggta
ggcgccttccacgggaaggggaggagaggagggaaatacggggccctgctcatggctgca
tacaacgatgagaaagacgtatttgaaacagtgtgtaaagtcgggtcaggcttcaaggac
gaagacctcgacaagctccccgagatattgaagccgtatatgagggacaggaggcatcca
cgcgtggtagccaacatggagcccgatgtatgggttgagcctgcattggtcgcggagata
ataggtgccgagctaacgctttcaccagtgcacacatgtgcctacggcaaggtgaagagc
gatgcaggcatatcgataaggttccccaggttcatacggtggagacccgataagagtccc
gaggatgctacgacgagcaacgagctagtggagatgtatcagcagcaattgaagaagata
acgggtgaaaccaagccaagcgaggaagcctaa

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