Dokdonia sp. Dokd-P16: DCS32_13825
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Entry
DCS32_13825 CDS
T05432
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
3.6.4.13
]
Organism
dod
Dokdonia sp. Dokd-P16
Pathway
dod03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dod00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DCS32_13825
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dod03019
]
DCS32_13825
03009 Ribosome biogenesis [BR:
dod03009
]
DCS32_13825
Messenger RNA biogenesis [BR:
dod03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DCS32_13825
Ribosome biogenesis [BR:
dod03009
]
Prokaryotic type
rRNA helicases
DCS32_13825
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
SNF2-rel_dom
SBF_like
AAA_19
UvrD-helicase
Helicase_RecD
DED
PhoH
Motif
Other DBs
NCBI-ProteinID:
AWH75203
UniProt:
A0A2S1QF96
LinkDB
All DBs
Position
3111686..3113026
Genome browser
AA seq
446 aa
AA seq
DB search
MTSTFTALGVMDAIQEALKTLEITSPTDIQQQAIPAMLTSKKDVIALAQTGTGKTVAFGV
PLLQLIDRTNPTTQAVILVPTRELGQQIQSNIAALAAHLPEVSTAVFYGGVTVKDQIERL
KEPAQIIVATPGRLIDLMERQAINITQANYLVLDEADEMVSSLKDSLDTIVTAMPNNRRT
FLLSATMPGAIKQIVQNYLSKNPIEVSAEMATLGSQKITHEYVVVEPIEKLDVLMHFLNS
RIGQRGIIFCKTKAAVNKLAKNLAINKFSSGAIHGSLSQPIRDRMMGQFREGHIDILVAT
DLAARGIDVKEIEYVVNYHLPEFYDMYVHRSGRTARAGATGYALTILQEEELKEIPEFEH
ELGISFSAFAKASPQQIEDNNTVLWAKKIFKTKPNREIATELKESVHAVFHHLTKEELID
KLMAERIASVLKSIEPKALPKKKKRK
NT seq
1341 nt
NT seq
+upstream
nt +downstream
nt
atgacaagtactttcacagcattaggtgtaatggatgctatccaagaagccttaaaaaca
ctagagattacttctcctacagatatacagcagcaggctatacctgcaatgctcacatcc
aaaaaggatgtcatagcgctcgcacaaactgggactggaaaaacggttgcctttggggta
ccgttattacagcttatagatcgcacaaacccaactacacaagcagttattcttgtgcct
acaagagaattagggcaacagatacaatctaatattgcggcacttgctgcacatcttcct
gaggtgagcactgctgttttttatggaggtgtaactgtaaaagatcaaatagagcgactt
aaggaacctgctcaaattattgtagcaacacctggacgtcttatagatcttatggaacgc
caagctatcaatatcacgcaagccaattatcttgtgcttgatgaggcagatgagatggtg
agctctcttaaagatagtcttgatactattgttactgcaatgcctaataatagaaggact
tttctgttatctgctactatgccaggagcaatcaaacaaatagttcaaaactacctttct
aaaaacccaatagaagtgagtgccgaaatggcaaccctaggtagtcagaaaattacacat
gaatatgtagttgttgagcctattgaaaaactagacgtattaatgcatttcttgaactca
agaatagggcagagaggtattatcttttgtaaaacaaaagcagcagtaaacaaactagcc
aaaaatctagcaattaataaattttcttcgggagccatccatggaagtttaagtcagccc
atacgtgatcgtatgatgggacagtttagagaagggcatattgacattctggtagcaaca
gatcttgctgctagaggtattgatgtaaaggagattgagtacgtagtaaattaccacctt
ccagaattttacgacatgtacgtacacagaagtggtcgtacggctcgtgctggtgcaact
ggatatgcgcttacgatattacaagaagaggaattaaaagaaatccctgagtttgaacat
gagttaggtatttctttttccgctttcgcgaaagcgtcaccacaacaaatagaggataat
aatacggtgctttgggctaagaaaatcttcaaaacgaagcctaacagagaaattgctacg
gagctaaaagagagtgtacacgcagtttttcatcacttgactaaggaagaacttattgat
aaacttatggcagagcgcattgcatctgttcttaaaagtatcgagcctaaagcacttcca
aagaagaagaaaaggaaatag
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