Oryza sativa japonica (Japanese rice) (RAPDB): Os01t0549400-01
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Entry
Os01t0549400-01 CDS
T02163
Symbol
Os01g0549400
Name
(RAP-DB) Similar to RNA helicase-like protein DB10.
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
dosa
Oryza sativa japonica (Japanese rice) (RAPDB)
Pathway
dosa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dosa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
Os01t0549400-01 (Os01g0549400)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
dosa03041
]
Os01t0549400-01 (Os01g0549400)
03009 Ribosome biogenesis [BR:
dosa03009
]
Os01t0549400-01 (Os01g0549400)
Enzymes [BR:
dosa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Os01t0549400-01 (Os01g0549400)
Spliceosome [BR:
dosa03041
]
Complex A
U1 snRNP components
U1 related factors
Os01t0549400-01 (Os01g0549400)
Complex B
Os01t0549400-01 (Os01g0549400)
Ribosome biogenesis [BR:
dosa03009
]
Eukaryotic type
Pre-60S particles
Helicases
Os01t0549400-01 (Os01g0549400)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
WW
ERCC3_RAD25_C
Motif
Other DBs
RAP-DB:
Os01t0549400-01
LinkDB
All DBs
Position
chr01:join(20522558..20522980,20523103..20523171,20524094..20524363,20524624..20524974,20525141..20525418,20526645..20526989,20527236..20527878)
AA seq
792 aa
AA seq
DB search
MSAGTAPAAPRYAPDDPSLPKPWRGLVDGTTGYLYYWNPETNITQYEKPLPPEDQLPPPP
PLPPPPPRSGRGDRDRDRRDRSRSRTPPRRDHRDRDRDRDRRHDDHRSAPSHHHPLPAAA
AIAADDPSTEAYRHRHEITVVGDNVPAPITSFETGGFPPEILKEIQRAGFSSPTPIQAQS
WPIALQCQDVVAIAKTGSGKTLGYLLPGFMHIKRLQNNPRSGPTVLVLAPTRELATQILE
EAVKFGRSSRISSTCLYGGAPKGPQLRDLDRGVDVVVATPGRLNDILEMRRISLKQVSYL
VLDEADRMLDMGFEPQIRKIVKEIPPRRQTLMYTATWPKEVRRIAEDLLVHPVQVTIGSV
DELVANSAITQNVELITPSEKLRRLEQILRSQDSGSKVLIFCTTKRMCDQLARTLTRQFG
ASAIHGDKSQSEREKVLSHFRSGRSPILVATDVAARGLDIKDIRVVINYDFPTGIEDYVH
RIGRTGRAGATGVAYTFFCDQDSKYAADLIKILEGANQRVPRDLADMASRGGRGGRKRNR
WATRSDRGGSHSELDSRYGGRDGLSGSSGRLDSSRSSRRHDYGDDGRSRRSGRGRSRSRS
RSDSDRYSRSPKRSRRHSRSRTRSRSRSRSRSYTRNRRASRSRSRSPGASRRHERSATGS
GSALPDSGHGERKRTPEADPSRNHTNHSDPKDDRHPEDGKVGKVDLDRSPTPQDKSGPYS
PAYNGKTSRSVSPGNQVEGNNKAAEVSKNPDPSSPPHHGKTREDEEEGMIDEDGEIADDP
RANATVQNGGDN
NT seq
2379 nt
NT seq
+upstream
nt +downstream
nt
atgtcggcagggaccgccccggccgcgccgcggtacgcgccggacgacccgtcgctcccc
aagccgtggcgcgggctcgtcgacggcaccaccggctacctctactactggaacccggag
accaacatcacccagtacgagaagccgctgccgcccgaggaccagctcccgccgcccccg
ccgctccccccgccgcctccccgctccggccgaggcgaccgagaccgcgaccgccgcgac
cgctcccgatcccgcaccccgccgcggcgcgaccaccgggaccgcgaccgggaccgcgac
aggcgccacgacgaccacaggtcggcgccttcccaccaccatcctcttccggccgccgcc
gccatcgccgccgatgatccctccaccgaggcgtatcgccaccgccacgagatcaccgtt
gtcggggacaacgtgccagctccgataacttcgtttgagactggtggattcccaccggaa
atcctcaaggagatacaacgtgctggattctcaagtccaacgccaatccaagctcagtca
tggccaattgccttgcagtgtcaagatgttgtagctattgcaaagacaggatctggaaaa
actcttgggtatctacttcctggatttatgcatattaaacgcttgcaaaacaacccaagg
tctggtccaacagtgctagttttggcaccgacaagggagcttgcaactcagattttggaa
gaagctgtgaaatttggcagatcatcaagaatttcttccacgtgtctatatggtggtgct
ccaaaaggcccccagctaagagatttggatagaggggtcgatgtcgttgttgctacacca
ggaaggttgaatgacatcctagaaatgcgaaggataagccttaagcaagtgtcgtacctt
gttctagatgaagctgaccgtatgttggacatgggatttgaaccacaaattcggaagata
gtgaaagaaattcctcctcgtcggcaaaccctcatgtacactgctacttggcctaaggaa
gtccgacgaattgcagaggatcttcttgttcaccctgtccaggtgaccattggaagtgtt
gatgagcttgttgctaatagtgctattactcagaatgtggagctgatcacaccgtccgaa
aagcttcgccgtctggagcaaattttgcgatcccaggattcaggttcgaaggtactaata
ttctgtaccactaagagaatgtgcgaccaacttgcaaggacacttactaggcaatttgga
gcttctgccattcatggtgataagtcccaaagtgaaagagagaaggtcctgagccatttt
agatctgggcgatctcctattttggttgcaacagatgttgctgcacgaggcttagacatc
aaagatatcagggttgtgatcaattatgatttccccactggcattgaagattatgttcac
cggattggcaggactggaagggctggtgccactggtgtggcctatacgtttttctgtgac
caggattcaaaatatgctgctgatcttattaaaattctggaaggcgcaaaccaacgtgtg
cctcgtgacttggcggacatggcctctcggggtgggcgtggtggtaggaagcgtaaccgg
tgggcaacccgctctgataggggtggttcgcattctgaactggattctaggtatggtgga
agagatggtctgtcagggtcttctggcagattggatagtagtcgcagtagtcgcaggcat
gactatggtgatgatggacggtctcgcaggtctgggagaggtcgcagtaggagccgtagc
agaagtgacagtgataggtatagccgaagtcctaagaggtcacgccgtcatagccgtagc
aggaccaggagtcggagccgaagcaggagcaggagctacactaggaaccgtcgtgctagc
cgcagcaggagccgtagccctggtgctagccgtaggcatgaaagaagcgctactggctct
gggtctgcactgccagactctgggcacggtgagcgcaaaagaacaccagaagctgaccca
tcaagaaaccatacaaaccactcagacccgaaagatgaccgacacccagaggatgggaag
gtgggaaaggttgatctcgatcggtcgcctactccacaagacaagtctggcccatatagt
cctgcttacaatggaaaaaccagtcgctcagtgagccctggtaatcaggtggaaggaaac
aacaaagctgcggaggtttctaagaatcctgatccttcatcgccaccccatcatggtaag
accagggaggacgaagaggaaggtatgatagatgaagatggagagatagctgatgatcct
cgggcaaatgcaaccgtgcagaatggcggtgataattga
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