Oryza sativa japonica (Japanese rice) (RAPDB): Os01t0801100-01
Help
Entry
Os01t0801100-01 CDS
T02163
Symbol
Os01g0801100
Name
(RAP-DB) Similar to Apurinic endonuclease-redox protein (DNA-(apurinic or apyrimidinic site) lyase) (EC 4.2.99.18).
KO
K01142
exodeoxyribonuclease III [EC:
3.1.11.2
]
Organism
dosa
Oryza sativa japonica (Japanese rice) (RAPDB)
Pathway
dosa03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
dosa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Os01t0801100-01 (Os01g0801100)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dosa03400
]
Os01t0801100-01 (Os01g0801100)
Enzymes [BR:
dosa01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.2 exodeoxyribonuclease III
Os01t0801100-01 (Os01g0801100)
DNA repair and recombination proteins [BR:
dosa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
Os01t0801100-01 (Os01g0801100)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Exo_endo_phos
Exo_endo_phos_2
COMM_domain
Motif
Other DBs
RAP-DB:
Os01t0801100-01
LinkDB
All DBs
Position
chr01:join(33927360..33927642,33927818..33927924,33928049..33928186,33928284..33928331,33928501..33928581,33928726..33928879,33929395..33929516)
AA seq
310 aa
AA seq
DB search
MSSMAGLGASQHGYPPRSHEPWTKLVHRERLPEWFAYNPKTMRPPPLSHDTKCMKILSWN
INGLHDVVTTKGFSARDLAQRENFDVLCLQETHLEEKDVEKFKNLIADYDSYWSCSVSRL
GYSGTAVISRVKPISVQYGIGIREHDHEGRVITLEFDGFYLVNAYVPNSGRFLRRLNYRV
NNWDPCFSNYVKILEKSKPVIVAGDLNCARQSIDIHNPPAKTKSAGFTIEERESFETNFS
SKGLVDTFRKQHPNAVGYTFWGENQRITNKGWRLDYFLASESITDKVHDSYILPDVSFSD
HSPIGLVLKL
NT seq
933 nt
NT seq
+upstream
nt +downstream
nt
atgtcaagcatggcaggcttgggagcttctcagcatggatatcctccccgaagtcatgag
ccctggactaaacttgtacacagagagagattacccgagtggtttgcatacaatccaaag
accatgaggcctccaccacttagccatgataccaagtgcatgaagattttatcctggaat
attaacgggcttcatgatgttgtaacgacaaaggggttttctgcacgtgacttggctcag
agagagaattttgatgtgttatgtcttcaagagacacatttggaggaaaaggatgttgaa
aagtttaagaatctgatagcagactatgacagctattggtcatgcagcgtctcgaggctt
ggctattcagggactgcagtaatttcacgggttaaaccaatttctgtccaatacgggatt
ggcatacgtgaacatgatcatgagggcagggttattactctggagtttgatggtttttac
ttggtaaatgcctatgttccaaattctggtcgttttctacgtagactgaattacagggtc
aataactgggatccgtgtttcagcaactatgtaaaaatactggaaaagtcgaaaccagtg
attgttgcaggagaccttaactgtgctcgtcaaagcattgacattcacaatcctccagca
aaaaccaagtctgcaggtttcacaattgaagagagagagtcatttgagacaaacttttct
agcaaaggccttgtggatactttcagaaaacagcaccctaatgctgtcggctataccttc
tggggtgaaaatcagcgcataaccaacaaaggttggcgattagattactttcttgcgtcg
gaatctattaccgacaaggttcatgattcatacattcttcctgatgtatcattcagcgac
cacagtccaattggcctggtactgaagctatag
DBGET
integrated database retrieval system