KEGG T02163: Os04t0492300-01

Oryza sativa japonica (Japanese rice) (RAPDB): Os04t0492300-01

Entry

Os04t0492300-01   CDS       T02163

Symbol

Os04g0492300

Name

(RAP-DB) Similar to DNA-directed RNA polymerase II largest chain.

K03018

DNA-directed RNA polymerase III subunit RPC1 [EC:2.7.7.6]

Organism

dosa Oryza sativa japonica (Japanese rice) (RAPDB)

Pathway

dosa03020

RNA polymerase

Brite

KEGG Orthology (KO) [BR:dosa00001]
09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    Os04t0492300-01 (Os04g0492300)
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:dosa03021]
    Os04t0492300-01 (Os04g0492300)
Enzymes [BR:dosa01000]
2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     Os04t0492300-01 (Os04g0492300)
Transcription machinery [BR:dosa03021]
Eukaryotic type
  RNA polymerase III system
   RNA polymerase III
    Core subunits
     Os04t0492300-01 (Os04g0492300)

SSDB

Motif

Pfam:

RNA_pol_Rpb1_5 RNA_pol_Rpb1_1 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4

Other DBs

RAP-DB:

Os04t0492300-01

LinkDB

Position

chr04:join(24593596..24593666,24593781..24593910,24594072..24594221,24594308..24594463,24594609..24594791,24594924..24595036,24595133..24595232,24595887..24596087,24596163..24596311,24596386..24596527,24596613..24596753,24596860..24597048,24597384..24597597,24597960..24598053,24598433..24598667,24599004..24599195,24599681..24599779,24600471..24600674,24600756..24601031,24601268..24601415,24601707..24601858,24602215..24602370,24602448..24602564,24602640..24602719,24602935..24603139,24603247..24603449,24603644..24603695)

AA seq 1383 aa
MARPEEKLRCTKEPFIEDVGTRRIKSIRFSMFSGNEVRQSAEVQVWNSRIYNHEMKPVPN
GLLDTRMGAANKLGECSTCHGSFAECPGHFGYLKLALPVFNVGFFNCILDVLKCICKSCS
RVLLMEKDRLEFLKKMRNPKADPLQKSAIMKKVRDKCKLSRCPWCGFINGVAKKGRAGLI
ILHDCSKTLDGSTEELRDALSHKKEKLSISAVRMLDPAIVLSLFKRMTDEDCELLNLGDR
PEKLIVTEIAVPPVPIRPSVFVAGGRMSNEDSITVILKSIANTNSILKENLQTGGQFMKC
FDCWQHLQLQVVEYINSDAPSLPESQHRGLVQRLKGKTGRFRGNLSGKRTEYTGRTVISP
DPNLRITEVAIPILMARVLTYPERVSYYNIEKLRQCIRNGPHKHPGANFIIQPDGTKLHL
KYCDRRIAARDLKYGCVVERHLEDGDIVLFNRQPSLHRMSIMSHRARIMPWRTLRFNESV
CNPYNADFDGDEMNLHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFLTSSFLV
TRKDNFYDRSSFSLLCSYLGDAMENIDLPTPALIKPIELWTGKQLFSVLVRPNACTKVFL
NLTVKEKIYKTPKGSTLEPEAMCPNDGFVYFRNSELLSGQVGKATLGNGNKDGMFSTLVR
DYNSHAAASCMNRLAKFSARFIGNHGFSIGVDDVQPGEHLNQEKKMKIDGGYKDCHDLIA
SYSKGALRLQPGCNAAQTLEQSITRVLNEIREEAGKVCMNTLHWRNSPLIMSQCGSKGSP
INISQMVACVGQQSVGGRRAPNGFIDRTLPHFPINSKTPAAKGFVANSFYTGLTATEFFF
HTMGGREGLVDTAVKTAETGYMSRRLMKGLEDLSVFYDQTVRNASGGIVQFLYGDDGMDP
AKMEGKDGKPLNLDQLFMKVMATCPQRGQNTLSPGEILQILNDKLSEHDASSDDGCSEKF
KQLLTYFLEDRIKLLKSTRRALLLDEDHVGERHSSFEESIAANISGISVKQLQVFLDTCL
SRYHLKKIEAGASIGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINAAKK
ISTPIITAELLSEKDVLSARIVKGSMEKAVLGEVAEAIKIVLKSSQPNLVVKLDMQRIEA
LHMGISADSVQLSILNHPKIKLKSEHVRVIDKSKLRIYPAGIDKSKLLYELHHLKSMLPK
VIVKGIPTVERAVISETGEENDKRYKLLVEGTNLLAVMGTPGVDAMKTKSNHIMEVNRTL
GIEAARRSIIDEIQYTMKSHGMNIDSRHMMLLADLMTYKGEILGITRYGIAKMKSSVLML
ASFEKTAEHLFNASYSGREDQIEGVSECIIMGIPMQLGTGILKVRQRLDHLPEFKYQPDP
ILA

NT seq 4152 nt +upstreamnt +downstreamnt
atggcgcggccggaggagaagctgcggtgcacgaaggagcccttcatcgaggatgtcggc
acgcggaggataaagagcatccggttcagcatgttctcggggaacgaggtgcgccaatcc
gcggaggtgcaggtttggaacagccggatctacaaccatgagatgaagccggtgcccaat
ggattgctcgacacgcggatgggtgcggcaaacaagcttggggagtgcagtacttgccat
ggttcatttgctgaatgcccgggtcattttggttacttgaagctcgcccttccagttttt
aatgttggattctttaactgtattttggatgtattgaagtgcatctgcaagagctgcagc
agggttcttcttatggagaaagatcggctagagtttttgaagaaaatgagaaatcccaaa
gcagatccgctacagaaaagtgctatcatgaaaaaagtgagggacaaatgcaaactatcc
cgttgcccctggtgtggattcataaatggtgttgctaaaaagggcagagcagggttgatt
attcttcatgattgtagcaaaacattggatggaagcacagaagagcttcgggacgcacta
tcacataagaaagagaaactatctattagtgctgttcgcatgctagaccctgcaattgtt
ctatctcttttcaaaagaatgaccgatgaggattgtgagttgctaaacctcggtgatagg
cctgagaaacttattgtgacagagattgcagtgccacctgtacctatacgtccttctgtt
ttcgtggctggtggaagaatgagcaatgaagatagcattaccgtcatattgaagagtatt
gctaatactaattccatccttaaggagaaccttcaaactggtggtcagttcatgaagtgc
tttgattgctggcaacaccttcaacttcaagttgttgaatatatcaacagtgacgcaccc
tctcttcccgagtcacaacatcgaggccttgttcagcgactcaaagggaagacaggccga
tttcgtggtaacttgtctggaaaacgtaccgagtacactggaaggactgtcatttctcct
gatccaaacttgagaataacagaggtggctattcccatcctgatggctcgagttttgact
tatcctgaaagagtttcatactataacatagagaagctgcgtcagtgtatacggaatggt
ccacacaaacatccaggggcaaatttcatcatacaacctgatggaacaaagctgcactta
aagtattgcgatagaagaattgctgctcgagatttgaagtatggctgtgtagtcgaaagg
catttagaagatggagacattgtcctcttcaatagacaaccgagcttgcatagaatgtca
attatgtctcacagggctaggattatgccctggagaacactaaggtttaacgagtctgtc
tgtaacccatataatgctgattttgatggcgatgagatgaatttgcatgttcctcagact
gaggaagcccgcactgaagcgcttatgctcatgggggttcagaacaatttatgtacccca
aagaatggggaaatactggttgcatccacgcaagactttttgacttcctcttttctggtt
acaagaaaagataacttttatgacaggtcgtcattttctctcttatgttcatatcttggt
gatgcaatggaaaacattgatttgccaacacctgctctgattaagcctattgagctttgg
actggtaaacaactcttcagtgtgttagtacgtcctaacgcatgtacaaaggtgtttctg
aatcttactgttaaagagaaaatttataagactcctaagggttcaactctggaacctgaa
gcaatgtgtcccaatgatggttttgtctacttccgaaacagtgaacttctatctgggcaa
gttgggaaggccactttaggtaatgggaataaggatggcatgttctccactcttgtaaga
gattataattctcatgctgcggcaagctgtatgaaccgcttggcaaaatttagtgcaaga
tttatagggaaccatggtttctcaattggtgtggacgatgtccaaccgggagaacattta
aaccaagagaagaaaatgaaaatagatggagggtacaaagattgccatgatcttattgct
tcctattccaaaggtgcactccgtttgcagcccggttgcaacgcagcccaaacattggag
caaagtataactcgtgtactgaatgaaatcagagaagaagctggaaaagtctgtatgaat
acacttcactggaggaacagcccattgatcatgtctcagtgtggatctaaaggttctcca
atcaacattagtcagatggttgcatgtgttggccaacaatcagttggagggcgtcgtgcc
ccgaatggcttcatagatcgaactcttccccactttcctataaattcaaagactcctgca
gccaaaggctttgtcgctaattctttctatactggcttgactgccaccgaattcttcttc
catacgatgggtgggcgagaaggtcttgttgatacagcggttaaaacagctgaaacagga
tatatgtcccgcagattaatgaagggattggaagatctctcagttttctatgatcagacg
gtccgcaatgctagtggtggtattgtacagttcctctatggagatgatggcatggatcct
gcaaagatggaagggaaagatggaaagcccttaaatttggatcaattgtttatgaaagtc
atggccacttgtcctcaaaggggacagaatacattatctccaggtgaaatcttacaaatt
ttaaatgacaagctctctgaacatgatgcctcctctgatgatggttgtagcgaaaagttc
aagcaactgttaacgtattttcttgaggatcgtataaaattgctgaagagcacaaggaga
gcgcttctcctagatgaagatcatgttggagagaggcactccagctttgaagaatccatt
gctgctaatatttctggtatatctgtgaagcaactacaggttttcttggacacatgttta
tctcgttaccacttgaagaaaattgaagccggagcatcaattggggcaattggggctcaa
agtattggagagcctggaactcagatgacattgaaaactttccattttgcaggagtagct
agcatgaatgttactcttggtgttcctcgcatcaaggaaattatcaatgctgctaaaaag
ataagcacacctattatcactgctgagttactttctgagaaggatgtgttgtctgcacgc
attgtgaaaggctctatggaaaaggcagtgctgggtgaggtggctgaagccataaagatt
gtgttgaaatcaagtcaaccaaacttggttgttaaactcgatatgcaacgtatagaagcc
ctgcacatgggcatctctgctgactctgtgcagctgtcaatattgaatcatccaaaaata
aagctaaaatctgagcatgttcgtgttattgataaatccaagttgagaatttatccagct
ggaatagataagtccaaacttctatatgagttacatcatctcaaatccatgcttccaaaa
gtgatcgtgaagggtattccaactgttgaaagagctgtgatcagcgaaactggtgaagaa
aatgacaaaagatacaagttgttggttgagggaacaaatctcttggcagtaatgggtact
ccaggagttgatgctatgaaaacaaaaagtaaccacatcatggaagtgaaccgaacactc
ggaattgaagctgcgaggagatctattattgatgaaattcagtatacaatgaaaagtcat
gggatgaacattgattcgagacatatgatgcttctggcagatttgatgacatacaagggt
gaaattcttggcattactagatatggtattgcaaaaatgaaaagtagtgtgctgatgctg
gcttcgtttgagaaaacagcggagcatctctttaatgcatcatacagtggtcgtgaggat
cagatagagggagttagtgaatgcattatcatgggtatacccatgcaacttggcactggt
attctcaaagtcagacaaaggcttgaccatttgcctgaatttaaatatcagcctgatcca
atattggcgtga

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