Oryza sativa japonica (Japanese rice) (RAPDB): Os04t0538700-01
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Entry
Os04t0538700-01 CDS
T02163
Symbol
Os04g0538700, ATG13B, AUTOPHAGY_ASSOCIATED_GENE_13B
Name
(RAP-DB) Autophagy-related protein 13 domain containing protein.
KO
K08331
autophagy-related protein 13
Organism
dosa
Oryza sativa japonica (Japanese rice) (RAPDB)
Pathway
dosa04136
Autophagy - other
Brite
KEGG Orthology (KO) [BR:
dosa00001
]
09140 Cellular Processes
09141 Transport and catabolism
04136 Autophagy - other
Os04t0538700-01 (Os04g0538700)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
dosa04131
]
Os04t0538700-01 (Os04g0538700)
03029 Mitochondrial biogenesis [BR:
dosa03029
]
Os04t0538700-01 (Os04g0538700)
Membrane trafficking [BR:
dosa04131
]
Autophagy
Autophagosome formation proteins
ULK complex
Os04t0538700-01 (Os04g0538700)
Atg1 complex
Os04t0538700-01 (Os04g0538700)
Mitochondrial biogenesis [BR:
dosa03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-independent mechanism factors
Os04t0538700-01 (Os04g0538700)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ATG13
Motif
Other DBs
RAP-DB:
Os04t0538700-01
LinkDB
All DBs
Position
chr04:complement(join(26958848..26959984,26957891..26958024,26954814..26955105))
AA seq
520 aa
AA seq
DB search
MSSMSDSGTGGRGGAELMVEQFHLKVLHAVLAVRGPRPLQPAASASFRRRDRWFHLPLHD
PQPPPAAEGVEAPEAGEPLVVDILLAHAAAGGGGGGGAGGEVVERWTVVCEPWPDAAAGE
GIPVNRAYKRCMTMLRSVYATLRFLPAYRVFRLLCANQSYNYEMVHRVGSFAVPLSRDEE
AAMRSYQFVPVETQHGRLVVSVQYLPSLAAFNLEISSLSPSMLIADYVGSPAAEPMRAFP
ASLTGATGSAFPQALSNQPQRPHSWATPALWPQAPRQQARFSPPHLLNASPTPSPPNFPS
GYLQSRPKGGSAPMSIPQVGDRRSPIHRPITLPPTSPRRVGETGTSSAQQSPSERCPSFG
RADGFRIMDPYASLSPGRKGKDTKDESGRFSALSSCDSPRQDDIDDADYPFAVDDVDTPS
SQPGSSDGKEARDQASSSSHKSQDAAVGSLVHLLKTARPLRNSNCPSQASAVESSEAAST
SSVVSRRKSDALEELQSFKEIKERLMSRSRAKQQEPPEKP
NT seq
1563 nt
NT seq
+upstream
nt +downstream
nt
atgtccagcatgtcggactcggggacgggcggccgcgggggcgcggagctgatggtggag
cagttccacctcaaggtgctccatgccgtgctcgccgtgcgcgggccgcgcccgctgcag
ccggccgcgtcggcgtcgttcaggcggcgggacaggtggttccacctcccgctccacgat
ccgcagcctccgcccgcggcggagggagtggaggcgccggaggcgggggagccgctcgtg
gtggacatcctcctggctcacgccgcagccggcggcggcggcggcggcggagcgggcggg
gaggtggtggagagatggacggtggtgtgcgagccctggccggacgccgcggcgggcgag
gggatacccgtgaaccgggcgtacaagcgctgcatgacgatgcttcggtcggtgtacgcc
acgctccgcttcctgccggcgtaccgcgtcttccgcctcctctgcgccaaccaatcctac
aactacgagatggtccaccgcgtcggctccttcgccgtgccgctctcccgcgacgaggag
gccgccatgcgctcctaccagttcgtccccgtcgagacgcagcacggccgcctcgtcgtc
tctgtccagtacctccccagcctcgctgccttcaatctcgagatctcctccttgtcgccc
tccatgctgatcgccgactacgtgggcagccctgctgccgagccaatgcgtgccttccca
gcttcgctcacaggagccacaggttccgctttcccgcaggcgctgtccaatcagccgcag
cgcccgcacagctgggcgacgccagcgctctggccgcaggcgcctaggcagcaagctaga
ttttcgccacctcatttgctcaacgcatcacccactccatcgccacccaattttcccagc
gggtatcttcaatctcgtcctaagggagggtctgcaccaatgagcataccacaggtgggt
gacaggaggagcccaattcaccggccgatcacattgccaccaacgtctccgaggagagta
ggggagacaggaacatctagtgcacaacagtctccatcagagagatgcccctcgtttggg
agggcagatggatttcgaataatggatccctatgcaagcttgtcgccaggacgcaagggc
aaggacactaaggacgaatctggcaggttctctgcactctcctcctgtgattcccctcga
caagatgatatagatgatgcagattatccctttgctgtggatgatgttgatacaccgagc
tcccagcctgggagcagtgatgggaaggaagctagagatcaggcaagttcgtcgtcccat
aaatcacaagatgccgcagttggctctctggtgcacctgctcaaaactgcacgccctctg
cgaaactctaattgtccatctcaagcatcagcggttgaatctagtgaagcagcctcaacc
agttctgtcgtgtcccgtaggaaatctgatgcactcgaagagctccaatcatttaaagaa
atcaaggagaggttgatgtcccggagtagagcaaaacagcaagagccaccagaaaaacca
tag
DBGET
integrated database retrieval system
