Oryza sativa japonica (Japanese rice) (RAPDB): Os04t0673400-01
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Entry
Os04t0673400-01 CDS
T02163
Symbol
Os04g0673400
Name
(RAP-DB) Similar to Uracil-DNA glycosylase.
KO
K03648
uracil-DNA glycosylase [EC:
3.2.2.27
]
Organism
dosa
Oryza sativa japonica (Japanese rice) (RAPDB)
Pathway
dosa03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
dosa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Os04t0673400-01 (Os04g0673400)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dosa03400
]
Os04t0673400-01 (Os04g0673400)
Enzymes [BR:
dosa01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.27 uracil-DNA glycosylase
Os04t0673400-01 (Os04g0673400)
DNA repair and recombination proteins [BR:
dosa03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
Os04t0673400-01 (Os04g0673400)
Prokaryotic type
Os04t0673400-01 (Os04g0673400)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UDG
Motif
Other DBs
RAP-DB:
Os04t0673400-01
LinkDB
All DBs
Position
chr04:complement(join(34387550..34387763,34387240..34387460,34386093..34386251,34385671..34385701,34384810..34384945,34384601..34384684,34383850..34383916))
AA seq
303 aa
AA seq
DB search
MAPPLPPTAPKTIADYLIRPSKRLRPTSPAPAAAASAPLSSSSLSPEQRRRADTNLALAR
ARRHLRLAESKASGGTAKLEELLVEETWLEALPGELHKPYALELCRFVAHERLHSPVPVY
PPPHLVFHALHATPFDRVKAVIIGQDPYHGPGQAMGLSFSVPEGIKIPSSLANIFKELQK
DLGCTVPSHGNLERWAVQGVLMLNTVLTVREHQANSHAKKGWEQFTDAVIKTISLKKSGI
VFILWGNSAQAKTRLIDETKHHILKSAHPSGLSASRGFFGCRHFSKTNQILERLGLSAID
WQL
NT seq
912 nt
NT seq
+upstream
nt +downstream
nt
atggcgccgcctctccctcccaccgcccccaaaaccatcgccgactacctcatccgcccc
tccaagcgcctccgccccacctctcccgctcccgccgccgctgcgtcggcccccctctcc
tcctccagcctctcgccggagcagcgccgccgcgccgacaccaacctcgcgctcgcccgg
gcgcgccgccacctccgcctcgccgagtccaaagcgtcgggcggcaccgcgaagctggag
gagctgctcgtcgaggagacgtggctggaggcgcttcccggggagctgcacaaaccctac
gcgctcgagctctgccgcttcgtcgcccacgagaggttgcatagcccggtgcccgtctac
ccgccgccgcatctagtcttccacgcgcttcacgccaccccgttcgaccgtgttaaggcc
gtcatcatcgggcaggatccataccatggacctggtcaggcgatggggttgtctttctca
gtaccagaggggatcaaaattccttctagcttagcaaacatatttaaagagctgcaaaaa
gatctaggttgcaccgtgccttcacatggaaacttggaaagatgggctgtgcagggtgtt
cttatgctcaacactgtattaactgtgagagaacatcaagccaattcacatgccaagaaa
ggatgggagcaatttactgatgctgtcattaagacaatatcactgaagaaatctggaata
gtctttattctctggggaaactcagctcaagcaaagacaagattgattgatgaaacaaaa
caccacattttgaaatccgctcatccatcagggctgtctgcaagcagaggtttctttgga
tgcaggcacttttctaaaacgaatcagatcttggagaggctgggactatctgccattgat
tggcaactctag
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integrated database retrieval system
