Oryza sativa japonica (Japanese rice) (RAPDB): Os09t0407600-01
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Entry
Os09t0407600-01 CDS
T02163
Symbol
Os09g0407600
Name
(RAP-DB) Similar to DNA mismatch repair protein.
KO
K08737
DNA mismatch repair protein MSH6
Organism
dosa
Oryza sativa japonica (Japanese rice) (RAPDB)
Pathway
dosa03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
dosa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
Os09t0407600-01 (Os09g0407600)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dosa03400
]
Os09t0407600-01 (Os09g0407600)
DNA repair and recombination proteins [BR:
dosa03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
Os09t0407600-01 (Os09g0407600)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_I
MutS_III
MutS_II
PTM_DIR17_Tudor
LBR_tudor
53-BP1_Tudor
Myc_N
Motif
Other DBs
RAP-DB:
Os09t0407600-01
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All DBs
Position
chr09:join(14378103..14378925,14379002..14379098,14379826..14379928,14380010..14380063,14380146..14380220,14380338..14380406,14380491..14380574,14380766..14380963,14381079..14381578,14381662..14381791,14383427..14383429)
AA seq
711 aa
AA seq
DB search
ASPSSRRLSNGRSPLLRKQSQITAFFSSPTAKPSPSPLNPRATKPPLAVPSPPPPNPPSP
PQEEETAVGRRLRVYWPLDDAWYEGRVEGYDVGSRRHRVRYDDGEEEVVDLASERYEWAA
AADEEEVTPQPSRKLRRLRRMSDAATAKSPGAVDGGGGGDETADSAEEEDEDWKNDAAAE
NDSEEVELDDEEDDEEEVVAVKTRKGKKNNPLSTSASTPKLASGLGSASISGSTLSKKRR
KVDAGALDCAKKFSFEPANTTGKVELKVPISCSQREQPLENALTALTGEVAERFAQRQAE
KFKFLGEGRKDAKGRRPGNPNYDPRTLSLPSQFLNSLTGGQRQWWEFKSQHMDKVLFFKM
GKFYELFEMDAHVGAKELDLQYMKGDKPHCGFPEKNFELNLEKLAKKGYRVLVIEQTETP
EQLDLRRKETGVKDKVVRREICAMVTKGTLTEGESLLANPDPSYLFSVAESYQCGSEKDQ
DGHTIGVCIVDVSTSKFIVGQFQDDAERHGLCSILSEIRPAEIIKPAKMLSPETEKALKS
NTRDPLINNLLPSMEFWDAEKTIHEIKQYYCSLDTPGAGAQISSAYLPELLSELIEAGDK
TYALSALGGSLFYLRQSLLDEKLLPCAEFERLTCSGLTNPIRKHMILDAAALENLEILEN
ARNGGLSGTLYAQLNHCVTGFGKRLLKRWIARPLYERQAILQRQSAIATFK
NT seq
2136 nt
NT seq
+upstream
nt +downstream
nt
gcgtcgccgtcgtcgcgccgcctcagcaacggccgctccccgctcctccgcaagcagagc
cagatcaccgccttcttctcctcccccaccgccaagccctcgccctcgccgctgaaccct
agggcgacgaagccccctctcgccgtcccctcccctccccctcccaacccgccatccccg
ccgcaggaggaggagacggcggtggggaggcggctgcgggtgtactggccgctggacgac
gcgtggtacgaggggagggtggagggctacgacgtggggtccaggcggcaccgcgtcagg
tacgacgacggcgaggaggaggtggtggacctcgcgagcgagaggtacgagtgggccgcc
gccgccgatgaggaggaggtgaccccgcagccgtcgaggaagctgcggcggctccggcgg
atgtcggatgccgcaacggccaagtcacctggtgcggtggatggtggtgggggtggggat
gagactgcggattccgctgaggaggaggacgaggactggaagaatgatgctgcggcagag
aatgattcggaggaggtggagctggatgatgaagaagacgatgaggaggaggttgttgct
gtgaaaacaagaaagggaaagaaaaataaccctttgtcgacgtcggcttcgacgccaaaa
ttagcatccggtttgggctcggcttctatttcagggtccacattgtcgaagaagaggaga
aaagtcgatgcgggtgcgttggactgcgctaaaaagttcagctttgaaccagctaatacc
actggaaaagtcgaattgaaagtgccaatcagctgtagccagagggagcagccgttagag
aatgctctcaccgctcttactggagaggtcgccgagcgctttgcgcagcggcaagcagaa
aagtttaaattccttggggaagggcgtaaggatgcgaaagggagacgacccggaaacccc
aactatgatcctagaactctttccttgccttcccagttcttgaatagcttgacaggcgga
cagaggcaatggtgggaatttaaatcacagcacatggataaagttctgttcttcaagatg
ggcaaattctatgaattatttgaaatggatgcacatgttggggcaaaggagcttgatctt
cagtatatgaagggtgacaagcctcactgtggattcccggagaagaattttgaattgaat
ttggagaaattagctaagaagggttatcgagttctggttatcgagcagactgaaacaccg
gagcagcttgacctccgccgtaaagaaactggtgtaaaagacaaggttgtgaggcgtgaa
atatgtgcaatggtcacaaaaggaacattgacagaaggggagtctctgctggcaaatcca
gatccatcatatctattttctgtggctgaaagttatcagtgtggttcagagaaggatcaa
gatggtcatacaattggtgtttgcatagttgatgtttcaacaagcaaatttattgtagga
cagttccaagatgatgctgaacgccatgggctatgttctattttatctgagattaggcct
gcagaaatcataaaaccagctaaaatgttgagtccagaaactgagaaagcactgaagagc
aatacgagagaccctttaataaacaatttgcttccatccatggagttctgggatgcagag
aaaactattcatgaaataaagcaatactattgctcattggacacacctggtgccggtgca
caaatcagttctgcctatctgcctgagctattgagtgagctaattgaagcgggagacaaa
acatatgcactttctgctcttggtggttctttgttttatttaaggcaatcccttctggat
gagaaattgcttccatgtgctgagtttgagcgccttacatgctcagggctcaccaaccct
atccgcaagcatatgatacttgatgcggcagcattggaaaatctggaaattttagaaaat
gcaagaaatggtggtctctcagggacattgtatgcgcagttaaatcattgtgttactgga
tttggaaaaaggttgcttaaaaggtggattgcaaggccattgtatgaacgccaggcaata
ctacagcgtcaaagtgccatcgctactttcaagtga
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integrated database retrieval system
