Oryza sativa japonica (Japanese rice) (RAPDB): Os11t0249400-00
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Entry
Os11t0249400-00 CDS
T02163
Symbol
Os11g0249400
Name
(RAP-DB) Similar to Polygalacturonase family protein, expressed.
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
dosa
Oryza sativa japonica (Japanese rice) (RAPDB)
Pathway
dosa00040
Pentose and glucuronate interconversions
dosa01100
Metabolic pathways
Module
dosa_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
dosa00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
Os11t0249400-00 (Os11g0249400)
Enzymes [BR:
dosa01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
Os11t0249400-00 (Os11g0249400)
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SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Glyco_hydro_28
Pectate_lyase_3
Beta_helix
NosD
Motif
Other DBs
RAP-DB:
Os11t0249400-00
LinkDB
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Position
chr11:complement(join(8085768..8086522,8085435..8085690,8085126..8085374))
AA seq
419 aa
AA seq
DB search
MPRRAHAHAAVAAHLLVSAFVAAAAAAAATYNVIDYGAVGDDGGVTDSARAFEAAWAAAC
AGDAAAAAATVVVPAGGVYLVSRARFAGPCRSGAVAVNMTGATVVAPVPYAGVQLWIVFQ
DVDGVSVAGGTLDGRGRALWACRRARRPDCPPATRSLTIYRSRNVAVRGLTSRDSAGIHI
TVQASAGVAIVDTVVSAPGRSPNTDGIHIKQSTGVTVRNAVIGTGDDCVSMVEGSSDVLI
EAVTCGPGHGISIGSLGDTPEQVAVRNITVKGAALAGTTNGLRIKTWAKANAGAVAGVSF
SGVVMRNVSNPIIVDQNYCPGNASCPTEARSPETCDLGSGIEISGVSYTDIEGTSATATA
VRFDCSPSRPCAGIAMRDVRLRYQPPAAAAEEEQPAASFCRNAHGVAFGDVDPPSCLTE
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgccgcgccgcgctcatgctcatgccgccgtcgccgcgcacttgctggtgtcggcgttc
gttgcggcggcggcggcggcggcggcgacgtacaatgtcatcgactatggcgcggtgggc
gacgacggcggggtgacggacagcgcgcgggcgttcgaggccgcgtgggcggcggcgtgc
gcgggcgacgcggcggcggcggcggcgacggtggtcgtgccggcgggcggggtgtacctg
gtgtccagggcgaggttcgccgggccgtgccggagcggcgcggtggccgtgaacatgacg
ggcgccacggtggtcgcgcccgtgccgtacgccggcgtgcagctgtggatcgtgttccag
gacgtggacggcgtgtccgtcgccggcgggacgctggacggccgcggccgcgcgctctgg
gcgtgccggcgcgcacgccgccccgactgcccgcccgccacgaggtcgctgacgatatac
cggtcgaggaacgtggcggtgcgcgggctgacgtcgcgggacagcgccgggatccacatc
accgtgcaggcgagcgccggcgtggcgatcgtggacacggtggtgtcggcgccggggcgc
agccccaacaccgacggcatccacatcaagcagtccaccggcgtgaccgtccgcaacgcc
gtcatcggcaccggcgacgactgcgtctccatggtcgagggctcctccgacgtcctgatc
gaggccgtcacttgcggccccggccacggcatcagcatcgggagcctgggggacacgccg
gagcaggtggcggtgcggaacatcaccgtgaagggcgcggcgctcgccgggacgacgaac
gggctgcggatcaagacgtgggcgaaggcgaacgccggcgcggtcgccggcgtctccttc
tccggcgtcgtcatgcggaacgtcagcaacccgatcatcgtcgaccagaactactgcccc
ggcaacgccagctgcccaaccgaggcacgcagccctgaaacctgtgacctcgggtcgggg
atcgagatcagcggcgtgtcgtacacggacatcgaggggacgtcggcgacggcgacggcg
gtgaggttcgactgcagcccgagccggccgtgcgccgggatcgccatgagggacgtccgg
ctgaggtaccagccaccggcggcggcggcggaggaggagcagccggcggcgtcgttctgc
cggaacgcgcacggggtggcgtttggggacgtcgatccaccgagctgtctaaccgagtag
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