Desulfosarcina ovata subsp. sediminis: DSCO28_69580
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Entry
DSCO28_69580 CDS
T06286
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
dov
Desulfosarcina ovata subsp. sediminis
Pathway
dov03030
DNA replication
dov03410
Base excision repair
dov03420
Nucleotide excision repair
dov03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
dov00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
DSCO28_69580 (ligA)
03410 Base excision repair
DSCO28_69580 (ligA)
03420 Nucleotide excision repair
DSCO28_69580 (ligA)
03430 Mismatch repair
DSCO28_69580 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
dov03032
]
DSCO28_69580 (ligA)
03400 DNA repair and recombination proteins [BR:
dov03400
]
DSCO28_69580 (ligA)
Enzymes [BR:
dov01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
DSCO28_69580 (ligA)
DNA replication proteins [BR:
dov03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
DSCO28_69580 (ligA)
DNA repair and recombination proteins [BR:
dov03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
DSCO28_69580 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
DSCO28_69580 (ligA)
MMR (mismatch excision repair)
DNA ligase
DSCO28_69580 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
DSCO28_69580 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_5
HHH_2
PTCB-BRCT
Motif
Other DBs
NCBI-ProteinID:
BBO86392
UniProt:
A0A5K8A1H8
LinkDB
All DBs
Position
complement(7974613..7976526)
Genome browser
AA seq
637 aa
AA seq
DB search
MYRKALIKNPSWDDDPTQNTPIAMNPTPVEELVDLLKAYNRAYRQGAPIVEDAEYDNLVE
QLRQRVPDHPFLQAVEPEQFSGRQQVRHPAPMLSIEKAYDRDQLERFVARVQKEADALGI
DTPTFRLTPKLDGLAGRDDGEVFATRGNGEMGYEISNAFAKGVVPIGGRGQGVGEIVVVK
SYFEKHMAEFFEHPRNMVVGIVSSDTLNENAKTALDAGMVRFVPYNQLQGPTVEAKQLVA
ERRGLVETLLAEVDYPTDGVVVAVTDEGLKNHMGATAHHYRWQIAIKSKGDTAETAVEDI
QWQVGRTGNVTPVMMVAPVSLSGATIRRVTAHHAGNIRNQGIGIGTRIEIIRSGEVIPKL
EKVLEAHGEVRLPETCPSCSGPLTWQNDFLKCTNPACRAQIEQRISHWFRILGNADWFGI
KTIGRIVESGHRSLEAVYRLTEADFLEMEFGPVQSKNLAEAITLSRTRLVEDWRFLAAFG
ISDLGTGDSRKLLAHFSIEAVLSLEEEQIEQIKGFGKITSKSIAADLKRIGPLMAHMLDL
GFNLQRTPLAAEQTAVESPIAGKGIVFTGKMVQGSREAMQAAARAMGARVQTAVSGTTDY
LVCGEKVGAAKMAKATRLGVSVMTEAEYQALVNGGRP
NT seq
1914 nt
NT seq
+upstream
nt +downstream
nt
gtgtacaggaaggccctgattaaaaatccctcatgggacgatgatcccacgcaaaacacc
cccattgccatgaatccaacccccgtagaagaactggtcgacctgctcaaagcctacaac
cgggcttaccgccagggcgcaccgatcgtcgaggatgccgaatacgacaatctggtggaa
cagctgcgccagcgcgtgccggaccacccgttcctgcaggccgtggaaccggaacagttc
agcggccgccagcaggtacggcatcccgcgcccatgctctccatcgaaaaagcctacgac
cgtgatcagctggaacggttcgtggcccgggtccaaaaagaggccgacgccctgggtata
gacacgccgaccttccggctgacccccaaactcgatggcctggccggccgggacgatggc
gaggtatttgccacccggggcaacggcgagatgggctacgaaatctccaacgcctttgcc
aagggagtggtccccatcggcggacgcggccagggcgtgggggaaatcgtggtcgtcaag
tcctacttcgagaaacacatggcggagtttttcgaacatccgcgcaacatggtggtcggc
atcgtctcctcggacacgctcaacgagaatgccaagaccgccctggacgcgggcatggtt
cgcttcgtgccctacaatcagctgcaaggcccgaccgtcgaggcgaagcagctggtggcg
gagcggcgcgggctcgtggaaaccctcctggccgaggtggactaccccaccgacggcgtt
gttgtcgcggtgaccgacgaggggttgaaaaaccacatgggtgccaccgcccaccactac
cgctggcagatcgccatcaagagcaaaggcgacacggccgagaccgccgtggaggatatt
cagtggcaggtgggccgcaccggcaacgtcaccccggtcatgatggtggcgccggtatcc
ctgtccggggccaccatccgccgggtcacggcccatcacgccggcaacatccgcaaccaa
ggcatcggcatcggcacgcgcatcgagatcatccgcagcggagaagtcattcccaaactg
gagaaggtcctggaagcccacggcgaggtccgcctgcccgagacctgtccatcgtgcagc
ggcccgctgacctggcagaacgattttctcaagtgcaccaacccggcctgccgggcccag
atcgagcagcgcatcagccactggttccgcatcctgggcaatgccgactggttcggcatc
aagaccatcgggcgaatcgtcgaaagcgggcaccgcagcctggaggccgtctaccggctc
accgaagcggatttcctggagatggagttcggcccggtgcagtccaagaacctggccgag
gccatcaccctcagccgcacccgactggtggaggactggcgctttctggccgcattcggt
atcagcgatctgggcaccggcgacagccgcaagctgctggcccatttctccatcgaagcg
gttctcagcctggaagaagagcagatcgagcagatcaagggcttcgggaagatcaccagc
aaatccattgccgcggacctcaaacggatcgggcccctgatggcgcacatgctcgatttg
ggattcaatctgcagcgcacccccctggccgccgagcagacggcggtggaaagccccatt
gccggcaagggcatcgtctttaccggcaagatggtccagggctcacgggaggccatgcag
gcggccgcccgggccatgggcgcacgggtgcagacggcggtcagcggtaccaccgattac
ctggtttgcggcgagaaggtgggcgccgccaaaatggccaaggccacccgcctgggggta
agcgtaatgaccgaagcggaataccaggccctggtaaacggcggccggccatga
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