KEGG   Dietzia psychralcaliphila: A6048_14005Help
Entry
A6048_14005       CDS       T05437                                 

Definition
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
dpc  Dietzia psychralcaliphila
Pathway
dpc03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:dpc00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    A6048_14005
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:dpc03400]
    A6048_14005
Enzymes [BR:dpc01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     A6048_14005
DNA repair and recombination proteins [BR:dpc03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     A6048_14005
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_M DNA_ligase_A_C RNA_ligase DNA_ligase_OB_2 DNA_primase_S
Motif
Other DBs
NCBI-ProteinID: AWH96419
UniProt: A0A2T5AUP8
LinkDB All DBs
Position
3057913..3060588
Genome map
AA seq 891 aa AA seqDB search
MASKGAKESVEVDGRTVRFTHPDKVLYDATGTTKADVLEYYLAVAPHLMAYAGQRPVTRK
RWPDGTEDKSFFEKNLPSHAPDWVSRVAIEHSSRTVTYPVLDSPATLAWFAQQAALELHV
PQWTLSDGEPGRTRRIVIDLDPGEDVDLDTTAKVALRVRDFLSEAGLDAFAVTSGSKGIH
LYARLDKAVSSKGASAVAKQIAQSLAKQTPDLVTATMKRSIRDGKVFVDWSQNSGAKTTV
APYSLRGRAEPWVAAPRSWEELADGGLKHLHWDEMLKRLESEGDLLEGLEGPTKRGGASK
KDAAKKTPARKSSASREKKSGSSKKSSSSSDDGDPERGGSDSDSADSRGSGSGSADPGGD
DSIRAAVKEGCDAGPTDPDAVVTSLDEYRRKRDRRKTPEPFDGEVDTDREDGDGPIFVIQ
EHHARRLHFDLRLEHHGVLASWAVPKNLPTEPKDRRLAVNTEDHPLGYETFEGTIPKGEY
GAGHMTIWDQGTYECEKWREDEIIVWLNGEQVSGRYVLVRTSAEKNQWIVQYMKDQSPDS
FYGGRDNPKSSYPDDDKRARGSDKTSDFGSDTSDMADLPDAPPLPMIPTSGSVTSLPGDK
WAFEGKWDGYRVTVATDGRQSRLMSRNGNPMDWLADGFPGLAQAIRKPAVLDAELVVPGP
DGVPEFSALAKQAAAEGDDSSIGPVHLFVFDVLGLDGVDLRRERWDRRREVLDLLTPALE
KVERVHVPGVLDGPGDRALDEAEEFGWEGIVAKRRDSHYQSGRRAKTWLKEKLLTTTEAV
IGGWRPGKGGRSGSLGSLLLGLPAQTGLTYIGRVGTGFSDRQGKALLEELEPLRRRSSPF
LEDLPSDARRDAIWVLPKLVVEVRHQGFTEDGVLRQSSWRDIRRDKLPGDL
NT seq 2676 nt NT seq  +upstreamnt  +downstreamnt
atggcgagcaagggcgcaaaggaatccgtcgaggtcgacgggcggaccgtgcggttcacc
caccccgacaaagtgctctacgacgcgaccggcaccaccaaggccgatgtgctggagtac
tacctggccgtggcgccgcacctgatggcgtacgccggccagcgtcccgtgacgcgcaag
cgctggcccgacggcaccgaggacaagtcgttcttcgagaagaacctgccctcccacgcg
cccgactgggtgtcgcgggtggcgatcgagcactcctcgcgcaccgtcacctacccggtg
ctcgactcccccgccacgctggcgtggttcgcccagcaggccgcgctcgagctgcacgtg
ccgcagtggacactgtccgacggcgagccggggcggacgcggcggatcgtcattgacctt
gaccccggtgaggacgtggacctggatacgacggcgaaggttgcactgcgcgtccgagat
ttcctctccgaggcgggactggacgcctttgccgtgaccagcggatccaagggcatccac
ctctacgcccgcctggacaaggccgtctcctccaagggtgcctccgcggtggccaagcag
atcgcccagtcgctggccaagcagaccccggacctggtcaccgccaccatgaagcgctct
atccgtgacggcaaggtgttcgtggactggagccagaacagtggcgccaagaccaccgtg
gcgccctactcacttcgtggccgcgccgagccgtgggtcgcggcccctcggtcgtgggag
gaactcgccgacggcgggctcaagcacctgcactgggacgagatgctcaagcgactggag
tccgagggcgacctgctcgaggggctggagggacccacgaagaggggcggcgcgtcaaag
aaggatgccgccaagaagactcccgccaggaagtcatcggcatcgcgggagaagaagtcg
gggagcagcaagaagagctcgtcgtcgtcggatgacggggaccccgagcgcggcggttca
gattccgacagcgccgattcccgcggttctggttctggtagtgccgatcccggcggcgat
gactcgatccgcgccgcggtcaaggagggttgcgacgccggccccactgaccccgacgcc
gtggtgaccagcctcgacgagtaccgccgcaagcgggatcgtcgcaagaccccggagccg
ttcgacggcgaggtcgacaccgatcgcgaggacggcgatggcccgatcttcgtgatccag
gaacaccacgcccgccgcctgcactttgacctgcggctcgagcaccacggcgtgctggcc
tcgtgggcggtgcccaagaacctgccgaccgagcccaaggaccggcgcctggccgtcaac
accgaggaccatccgctgggctacgagacgttcgagggcaccatccccaagggcgaatac
ggcgccggccacatgaccatctgggaccagggcacatacgagtgtgagaagtggcgcgag
gacgagatcatcgtgtggctcaacggcgagcaggtctcgggccggtacgtcctggtgcgc
acgagcgccgagaagaaccagtggatcgtgcagtacatgaaggaccagtcgccggactcc
ttctacggtggacgcgacaacccgaagtcgtcctatcccgacgacgacaagcgagcccgc
ggctccgacaagacttctgattttggttcagatacttcggacatggccgacctccccgat
gctcccccactgccgatgatccccacctcggggtcggtgacatccctgcccggggacaag
tgggcgttcgagggcaagtgggacggctaccgcgtgaccgtggcgaccgatggccggcag
agccggttgatgagccgcaacggcaacccgatggactggctggccgacggcttccccggg
ttggcgcaggcgatcaggaagccggcggtgctcgacgccgaactggtggtgccgggcccg
gacggtgtgcccgagttctccgctttggccaagcaggccgccgcggaaggagacgactca
tctatcggcccggtgcacctgttcgtctttgacgtgctgggactcgacggcgtggacctg
cgccgggagcggtgggatcggcgtcgcgaggtgctggacctgttgacgccggcactcgag
aaggtcgagcgggtgcacgtgccgggggttctcgacggccccggcgaccgcgcactggac
gaggcagaggagttcggctgggagggcatcgtggccaagcgccgggactcgcactaccag
tcgggcaggcgggccaagacgtggctcaaggagaagctgctcaccaccaccgaggccgtc
atcggcggctggcgaccgggcaagggcggacgctccggttcactgggctcactgctgctc
ggactgcccgcacagaccgggctcacctacatcggccgcgtgggcaccggcttctccgac
cgacagggcaaagctctgctcgaagagctcgaaccgctgcgccgccgctcgagtccgttt
ctcgaggacctgccgtccgatgcccgccgtgacgccatctgggtgctgcccaagctcgtg
gtggaggtccgccaccaggggttcaccgaggatggcgtgctccggcagtcgtcgtggcgg
gacatccggcgggacaagctgccgggggatctatag

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