Pseudodesulfovibrio piezophilus: BN4_10475
Help
Entry
BN4_10475 CDS
T02481
Name
(GenBank) Transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
dpi
Pseudodesulfovibrio piezophilus
Pathway
dpi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
dpi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BN4_10475
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dpi03400
]
BN4_10475
Enzymes [BR:
dpi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BN4_10475
DNA repair and recombination proteins [BR:
dpi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BN4_10475
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
CCH47713
UniProt:
M1WUP8
LinkDB
All DBs
Position
complement(505516..508992)
Genome browser
AA seq
1158 aa
AA seq
DB search
MSLTLPPPIQDFIKGSTDSVRVFKSGPATQAFVAVSLIAHQQSSVLIVPGAAEFKQAKAL
LSLFSTKKTDEIRPTWEEEWITFPPYNPRQPDAQSWSERWAALYALTYGKKPCGVLMTVD
NLLPHWPDKSVLQENWVALSKGEEMSPELLLEQLISWGYVRRKLVSGAGDIAMRGDILDI
QAPGYPLPLRLEFFGDSLEEIRLFDSSSQRSKADLDEVILLPVSPGITTEKYISEAQKVW
EKLRKTGEISSTEEFALTERLAMNDGFVWPGMYYASPVGLESHFPSGMNYLLSSGSSLRA
RLEDQDQAWRGYIEEEARQKRIRWPLRFFCRSHEGARQVWQKKRQIVFEELTIGREKNGI
DMAEAPYSDFTDLFWKPEAARRPWSALMDSLKEWGRASGQTILSFRSERSRQKFLNLALQ
EQLPLSLKYSPRTRGLFALVSPLRKGMELIWSQTRILGEEVLQPEPVKVHAGRDKAFKGL
DKYEDLNEGDLLVHRDYGLAQFGGLHHMNVGDAANDYLLLFFSGEDKLFLPVDRLNLIQR
FKGPEGSGTPSLDKLGGTRWAKTTARVRKAIEKIAHGLVEMYAFRRVAKGFSYGPLDDMY
AEFEATFGFEETPDQDKAVKDVFRDMEKAEPMDRLVCGDVGFGKTEVALRAAFRAALEGL
QTALLCPTTVLAEQHYQTFSKRMEGFPVRIGLLSRFVSRKRQKTVLEAAARGEIDILIGT
HRLLSKDVELPNLGLLILDEEQRFGVKHKEKLKHFRQNIDVLTLTATPIPRTLQLSLSGI
RGLSIIETPPLDRKPVETAITEREALSLKAVLRRELDRGGQIYWVYNRVNGLERVAEFVR
ELAPDAKVGMAHGKMTEKGLEETMRGFWHGEIDVLVCTAIVESGLDFPNANTLIVDQAQL
FGLGQLYQLRGRVGRSDRQAYAYFVVPKIDDISEIVRKRLRIILDMNYLGAGFKIAMEDL
RLRGAGNILGEAQSGQIAKVGLELFLEMLEEEVRRLQGESEARASEPELNFIFEAHIPGD
YIDDARERLRYYKSLSSAKDEIALKELEAEIKDRFGHLPQQLETFFGVLHIKQSLSRLQA
ERAELYPGRVVVTWGAQSSVNPAELMGWINERIERAKLLPPTKLELRYTDSISMREALDK
TAVELEELLESETPASVQ
NT seq
3477 nt
NT seq
+upstream
nt +downstream
nt
atgtcattaacactccccccacctattcaggattttatcaaaggatcaacagattctgtt
cgagtttttaaaagtggaccggctacgcaggcttttgtcgcagtgtcattgatagcccac
caacagagttctgttttaatcgttcccggtgctgctgagttcaagcaagcaaaagcgctg
ctttcactcttctccacaaaaaaaacagatgaaatacgaccgacgtgggaagaagagtgg
attacatttcctccgtataatccgcgtcaaccagatgctcaatcctggagcgagagatgg
gcagctctttatgctttgacatacggtaagaagccatgtggtgtcttaatgactgttgac
aaccttttgccacattggcccgataagtctgtccttcaagaaaattgggtagcgctgtca
aaaggggaagaaatgtctccagagcttcttctggaacaattaatttcctggggatatgtt
cgccgaaagttagtatcaggagcaggagatatcgccatgcgtggtgatatcttggatatt
caagccccagggtacccactcccgcttcgacttgaattttttggagacagtcttgaggag
attcgacttttcgatagctcttcccagcgttcaaaagccgacttggacgaggtcattctt
ctacctgtttcccctgggataactacggaaaagtatatatccgaagcccaaaaagtctgg
gagaaacttcgcaaaaccggagagatatcctctacagaggaatttgctttaacagagcga
cttgcgatgaatgacggctttgtctggcccggtatgtattatgcttcgcccgttggattg
gaatctcactttccttcaggaatgaattatctcctgtcttccggaagttcactcagagct
cgtttggaagatcaagatcaagcttggcggggctatattgaagaagaagcacggcaaaaa
cgaattcgttggcctcttcgtttcttctgccgttctcatgaaggagcccggcaggtatgg
cagaaaaaacgtcagattgtctttgaagaactgactattggtcgagaaaaaaatggcatc
gatatggcggaggcgccctatagtgatttcacagatcttttttggaaacctgaagcagct
cgacgtccatggtctgctcttatggactcattgaaagaatggggaagggcttctgggcag
actatactcagctttcgttcagaaagatctcgacagaaatttctcaatctcgcgttacaa
gaacagctccctctcagtttgaagtactcacctcgaactcgtggcctgtttgccttagtc
tctccgctgcgaaaaggtatggaactcatatggagtcagacacggatccttggtgaagaa
gtccttcaacctgaacccgtaaaagttcacgcagggcgagataaagcctttaaaggactt
gataaatatgaagatttaaatgaaggagatttgttagtccatcgagactatgggcttgct
caattcggaggtttgcatcacatgaatgtgggagatgctgccaatgactaccttttgttg
tttttttctggtgaagataagctgtttttgcctgtagatagattaaatctcatacaacgt
ttcaaaggtcccgagggcagtggaactccttcactcgataaattggggggcacacgttgg
gcaaagacaaccgccagagtacgaaaggctattgaaaaaatagctcatggattggttgaa
atgtatgcttttcgtagagtggctaaaggattttcttacgggcctttggatgacatgtat
gccgaatttgaagcgacttttggttttgaagaaacacctgaccaggacaaagctgttaag
gatgttttccgagatatggaaaaagcggaaccaatggatcgactcgtatgtggtgatgtc
ggtttcggaaaaactgaagttgccttgcgcgctgctttcagagcggcccttgaaggattg
cagactgctcttttgtgtcctactacggttttggcagaacaacattatcaaacattcagc
aaacggatggaaggatttcctgttcgaatcggcttactaagccgttttgtttcccgtaag
cgtcagaaaacagttcttgaggctgcggctaggggggaaatagacattcttatcgggacg
catcgacttctatctaaagatgtcgaattgcctaatcttggtttactcatcttggacgaa
gagcagcgttttggcgtcaaacataaggaaaaactaaaacatttcagacaaaatatcgac
gttcttacattaacagcaacccccatcccaagaacgcttcagctttctctgtcgggcatt
cgaggattatctatcattgaaacgccgcctttagatagaaaaccggttgaaaccgccata
acggaacgagaagctctttcccttaaagctgttttgcgacgagagcttgatcgaggtggg
caaatctattgggtgtataatagagttaatgggttggaacgtgtggctgaatttgttcga
gaacttgcaccagacgcaaaagtgggtatggctcatggaaagatgaccgagaaaggactt
gaggaaaccatgagagggttttggcatggagaaattgatgtccttgtctgtaccgctatt
gtcgaatcgggtcttgattttcccaatgctaacacacttattgttgaccaagctcaactc
tttggactcggacagttgtatcagttacgcggacgagtcggtagaagtgacagacaggct
tatgcttattttgtggtgcccaaaatcgatgatatttcagagattgttcgtaaacgtctg
cgcattattttggatatgaactaccttggtgcgggatttaaaatagcaatggaagattta
cgacttcgcggcgctggtaatattctcggtgaagctcagtcggggcagattgccaaagtg
gggcttgaactttttcttgaaatgcttgaggaagaggtccgtagactacagggggaatct
gaagcccgggcttcggaaccagagttgaattttatctttgaagcgcatattcctggagac
tatatcgacgatgccagagaacggttgcgttactataaatcgctttcttctgccaaagat
gaaatagctctcaaggaattggaagcggaaataaaagatagatttggccacttgccacag
caattggaaactttttttggagttctgcatattaagcaatcactctctcgattgcaggcg
gaaagagcagaattataccctgggcgtgttgttgtaacctggggagcacagtcctctgta
aatccggccgaactcatgggatggatcaatgaacgaattgaaagagcgaagctattacct
ccaacaaaattggaattgagatatacggattccatttctatgcgtgaagccttggataaa
acagctgtcgaacttgaggaactccttgagagtgaaacgcccgcatcagtccaataa
DBGET
integrated database retrieval system
