KEGG   Daphnia pulex (common water flea): DAPPUDRAFT_304798Help
Entry
DAPPUDRAFT_304798 CDS       T04347                                 

Definition
(GenBank) hypothetical protein
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
dpx  Daphnia pulex (common water flea)
Pathway
dpx03030  DNA replication
dpx03410  Base excision repair
dpx03420  Nucleotide excision repair
dpx03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:dpx00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    DAPPUDRAFT_304798
   03410 Base excision repair
    DAPPUDRAFT_304798
   03420 Nucleotide excision repair
    DAPPUDRAFT_304798
   03430 Mismatch repair
    DAPPUDRAFT_304798
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:dpx03032]
    DAPPUDRAFT_304798
   03400 DNA repair and recombination proteins [BR:dpx03400]
    DAPPUDRAFT_304798
Enzymes [BR:dpx01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     DAPPUDRAFT_304798
    6.5.1.6  DNA ligase (ATP or NAD+)
     DAPPUDRAFT_304798
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     DAPPUDRAFT_304798
DNA replication proteins [BR:dpx03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    DAPPUDRAFT_304798
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     DAPPUDRAFT_304798
DNA repair and recombination proteins [BR:dpx03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     DAPPUDRAFT_304798
   NER (nucleotide excision repair)
    Other NER factors
     DAPPUDRAFT_304798
   MMR (mismatch exicision repair)
    Other MMR factors
     DAPPUDRAFT_304798
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase
Motif
Other DBs
NCBI-ProteinID: EFX88837
JGI: Dappu1_304798
UniProt: E9FUX8
LinkDB All DBs
Position
Unknown
AA seq 677 aa AA seqDB search
MLIFFYSDAHDSKDGATELLNPDSYNPGKPNYHPIQDATWKKGENVPYMVLAKTLELIEE
TSSRLKMIEILANYFRSVFLLSPDDLLCSVYLCLNQLAPAYMGIELGVGEGIIIKAIAQA
TGRATDKVKSDVATKGDVGLVAEASKGTQRTLSIPVSLTVKSVFTKLTEVAVMTGNSSQI
KKVDKIHGILVAAKQLESRFITRSLAGKLRIGLAEQSVLQALAFAATATPPNQSTPPTQL
NCFAGLSSETIKAKVEASAVILKTAYCQCPSYDQIIPVLLREGVEALPLHCTLTPGVPLK
PMLACPTRGVGEVLQKFESTKFTCEWKYDGERAQIHLLENGEIRIYSRNQENNTSKYPDI
ISRFQSWIEPSASVRSAILDTEAVAWDTDKKQILPFQILSTRKRKDAVEADIKVQVCVYA
FDLLYLNGESLVTMPLIERRQRLWNSFHKVDGQFGFATSRDPQTVEEIEEFLDESLKGNC
EGLMVKGLVKDATYEIAKRSKNWLKLKKDYLDGIGDTIDAVVIGGYLGRGKRTGLYGGFL
LACYDEANEEYQSLCKIGTGFSDEDFQAHSDFLKNHKIPKPKPYFRFDPSLSPDDWFEPV
QVWEIKCADLSISPVHRAATGIVDPVKGISLRFPRFIRIRPDKNPENATSSEQIADLYNS
QEQVKNKKTDDDEEGFY
NT seq 2034 nt NT seq  +upstreamnt  +downstreamnt
atgctaatttttttttattcagatgcacacgattcaaaagatggtgcaactgaattgttg
aatcctgattcatataatcctggcaaaccaaactatcatcctattcaagatgcaacatgg
aaaaagggagaaaatgtcccttacatggttcttgctaaaacactggaattaattgaagaa
accagttccaggttaaaaatgatagagattttagctaactatttccgaagtgttttcctg
ttgtcaccagatgatttactatgttctgtttacctatgtttaaatcagttagcccctgca
tacatgggcatagaacttggtgtaggagaaggcataataattaaagcaattgcacaagct
actggaagagccacagataaagttaaatctgatgttgctaccaaaggggatgttgggttg
gtagcagaggcatccaaaggcacacagaggactctttctataccagtgagtttaactgtg
aaaagcgttttcactaaattaacagaagtagccgtgatgactggaaatagttctcaaata
aagaaagttgataagattcatggaatactcgttgctgcaaagcaattagaatcacgtttt
attacccgatcgcttgctggaaaacttcgtattgggttagctgaacaatcagtacttcaa
gctttagcttttgcagctactgcaactcctccgaaccaatctacaccgcctacccagttg
aattgttttgcgggacttagtagcgaaaccattaaagcaaaagtggaagcttcggcagtt
attttgaaaacagcatattgccaatgccctagctacgatcaaattattccagttctctta
cgcgaaggcgtagaagcgctcccgctacactgtacactaactccgggtgttccacttaaa
cccatgttagcgtgtcccacaagaggagtcggagaagtattacaaaaatttgaatctacc
aagtttacttgcgaatggaaatatgatggagaaagagctcagatacatcttctcgagaat
ggagaaatcagaatttacagcagaaaccaggaaaataacacttccaaatatccagacata
atcagtcgctttcaatcgtggattgaaccatcagcctcagtccgttcagctattttggat
accgaagctgtagcgtgggatacagacaagaaacaaattcttccatttcaaatactttca
acaagaaaacgaaaggatgctgtggaagcagacatcaaagtccaagtttgcgtttatgcg
tttgatttgctctatttaaatggggaatctcttgttacaatgcctttaatagaacgtcgg
caaaggctttggaatagtttccacaaagttgacggccagtttggctttgccaccagcaga
gatcctcaaacagtcgaggagatcgaggaatttttggacgagtcattgaaaggcaattgc
gaagggttaatggtaaagggattagtcaaggacgcaacttacgaaattgccaaaagatcg
aaaaactggttaaaattaaagaaagactatttggacggtataggcgatacgattgatgct
gtagtaattggtggatatttaggcagaggcaagcgcactggtctctacggaggattttta
ttggcatgctacgatgaagctaatgaagaatatcagtctctttgtaaaataggtaccggt
tttagcgatgaagactttcaagcccatagtgatttcttgaaaaatcataaaattccaaaa
ccaaagccttattttaggttcgacccaagcttgtctcccgatgattggtttgaacctgtt
caagtgtgggaaattaaatgtgccgatttgtcaatttcgcccgtacatcgggccgccacc
ggaatcgttgatccggttaaaggaatttcattgagatttcctcgttttatcagaatcagg
ccagacaagaatcctgaaaatgctacttcatcagaacagattgcggacctatacaacagc
caagagcaggttaaaaataagaaaactgatgatgatgaagagggtttctactaa

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