KEGG   Diaphorobacter polyhydroxybutyrativorans: BA022_07305Help
Entry
BA022_07305       CDS       T04937                                 

Gene name
ligD
Definition
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
dpy  Diaphorobacter polyhydroxybutyrativorans
Pathway
dpy03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:dpy00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    BA022_07305 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:dpy03400]
    BA022_07305 (ligD)
Enzymes [BR:dpy01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     BA022_07305 (ligD)
DNA repair and recombination proteins [BR:dpy03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     BA022_07305 (ligD)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S DUF3511
Motif
Other DBs
NCBI-ProteinID: ASI68387
LinkDB All DBs
Position
complement(1608217..1610730)
Genome map
AA seq 837 aa AA seqDB search
MPRKDPLAVYKQKRNFAVTPEPADGGAQSQALQYVIQKHWASRLHYDLRLELDGTMKSWA
VPKGPSYDPADKRMAVQVEDHPISYNQFEGQIPPRQYGAGRVIIWDRGYWVPQGNPREDY
RKGKLKFEIHGHKLHGHWTLVRMHGRDDDKQPPWLLIKERDGLERAAEEFNVVDEMPDSV
ADQPPVAPPARAFAQRAGPAQMQPTAAAVTWTSAPTAPLPDQLSPQLATLVDGPPADLTQ
WLWELKFDGYRMLARVQRGKARLYTRNGNDWTARMPALAQALAALPLSSAWIDGEVLVLD
AQGVPDFQALQNAFDGRSTDALVFYAFDLPFAHGRDLTQMPLTERRALLRSVLQPASSDR
VRFSEAFEARPADLVASACRLGFEGVIGKRKDSVYASRRSTDWIKLKCSHRQEFVIGGYT
DPQGSRTGIGSLLLGVHDEGGALRYAGNVGTGFSERVLADLARRLGTLRTQDSPFAQPRS
IPRKVHWVRPTLVAEVSFAEWTKEGKVRHAVFRGLRDDKPAAAIVHEEPAHLQGAAPSRA
ARVGGLQVTSPARVVDPSTGFTKLDLVRYYATVAPLMLPHLQGRPVSLLRAPQGLEGELF
FQKHLDTGALDGVSALSPDLDPGHPPLLEVATAQGLLSAAQMNTVEFHTWNARKDRIERP
NRITFDLDPGEGVPWAHVQEGAALVRLMLTELGLPSFLKTSGGKGLHVVVPIKRLHGWDA
VKDFSQAVVQHLARTLPQRFVAKSGPRNRVGKIFVDYLRNGFGATTACAWTARARPGMGV
SVPVAWQELDALTGGAHWTVQTVDRRLKTGNGPWSGYDEAAVSIGPAIKALGEKRHL
NT seq 2514 nt NT seq  +upstreamnt  +downstreamnt
atgccccgcaaagacccgctggcggtgtacaagcaaaagcgcaactttgccgtgacgcca
gagcccgcggacggcggagcgcagtcgcaggcgctgcagtacgtaatccagaagcactgg
gccagccgcctgcactatgacctgcgcctggagctggacggcaccatgaagagctgggcc
gtacccaagggccccagttacgatcccgcggacaaacgcatggccgtgcaggtggaagac
cacccgatttcctacaaccaattcgaagggcagatcccgccgcgccaatacggcgcgggg
cgggtcatcatctgggaccgcggctattgggtaccgcagggcaatccgcgcgaagactac
cgcaaggggaagctcaagttcgagatccacggacacaaattgcacggccactggaccctg
gtgcgtatgcatggccgggacgacgataagcagcccccctggctgctgatcaaggagcgc
gacgggctggagcgtgcggccgaggagttcaacgtggtcgacgaaatgcccgacagcgtg
gcagaccagccgccggttgcgccaccagcgcgcgcattcgctcagcgggccgggcccgcg
cagatgcagcccacggcagcggcggtgacgtggacatccgcgcccacggcaccgctgcct
gaccagctatccccgcaacttgccacgctggtggacggaccgccggccgaccttacgcag
tggctgtgggagctcaagttcgacggctatcgcatgctggcccgggttcagcgcggcaag
gcacggctgtacacccgtaacggcaacgactggaccgccaggatgcccgccctggcgcaa
gcgctggccgccttgccgctgtcctctgcatggatcgacggcgaggtgctggtgctggac
gcccagggtgtccccgacttccaggcgctgcagaatgcgtttgacgggcgatcgaccgac
gcgctggtcttttacgccttcgacttgccttttgcgcacgggcgtgatctgacgcagatg
cccctcactgaacggcgtgcgctgctgcgcagcgtgctgcagccagcctcctcagaccgt
gtgcggttcagcgaagcgttcgaagcccggccggcggacctggtggcctcggcctgccgg
ctgggatttgaaggggtgatcggcaagcgcaaggacagcgtgtatgcctcgcgccgcagc
acggactggatcaagctcaagtgcagccatcggcaagagttcgtcatcggcggatacacc
gacccgcagggctcacgcacagggatcggttcactgctgctgggcgtgcatgacgagggc
ggcgccctgcgctatgccggcaatgtgggcacgggtttcagcgagcgcgtcctcgcggac
ctggcccggcggctaggcactttgcgcacccaggacagcccgtttgcccagccgcgctcc
atcccccgcaaggtgcattgggtgaggcccacgctggtggcggaggtttccttcgccgaa
tggacgaaagagggcaaggtgcgccacgccgtgttccgcgggttgcgcgacgacaagccc
gccgccgccatcgtccacgaggagcctgcgcacctgcagggggctgcgcccagccgcgcc
gcgcgcgtgggggggctgcaggtgacaagcccggcgcgcgtggtggatccctccaccggg
ttcaccaagcttgatctggtgcggtactacgccacggtagcgcccctcatgttgccccac
ctgcaggggcggccggtgtccctgctgcgggcgccgcaaggtctggagggcgagctcttc
tttcaaaagcacctggacacgggggcattggacggggtgagtgcgctgtcacccgacctg
gatcctggccacccgccgctgctggaagtggccacggcgcagggcctgctgtcggccgcg
caaatgaacaccgtggagtttcacacctggaatgctcgcaaggaccggattgagcggccc
aaccgcatcaccttcgacttggatccgggcgagggcgtgccgtgggcgcacgtgcaagag
ggcgcagcgctcgtgcgcttgatgctcaccgagctgggcctgccatcgttccttaagacc
agcggcggcaaggggctgcatgtggtggtgcccatcaagcgactgcacggctgggatgcc
gtgaaagacttcagccaagccgtggtgcagcatctggcgcgcaccctgccgcagcgtttc
gtggccaagagcgggccccgcaaccgcgtgggaaagatctttgtggactacctgcgcaat
ggctttggagccaccacggcctgtgcgtggacggcgcgcgcgcggccgggcatgggcgtg
tccgtgcccgtcgcctggcaggaactggacgcgctcacgggtggcgcccactggacggtg
cagaccgtggaccggcgcttgaagacgggcaatggcccttggtcgggctatgacgaggct
gccgtgtccatcgggccggcgatcaaggcgcttggggaaaaacgccacctatag

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