KEGG   Diaphorobacter polyhydroxybutyrativorans: BA022_13375Help
Entry
BA022_13375       CDS       T04937                                 

Definition
(GenBank) ATP-dependent DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
dpy  Diaphorobacter polyhydroxybutyrativorans
Pathway
dpy03030  DNA replication
dpy03410  Base excision repair
dpy03420  Nucleotide excision repair
dpy03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:dpy00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    BA022_13375
   03410 Base excision repair
    BA022_13375
   03420 Nucleotide excision repair
    BA022_13375
   03430 Mismatch repair
    BA022_13375
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:dpy03032]
    BA022_13375
   03400 DNA repair and recombination proteins [BR:dpy03400]
    BA022_13375
Enzymes [BR:dpy01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     BA022_13375
    6.5.1.6  DNA ligase (ATP or NAD+)
     BA022_13375
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     BA022_13375
DNA replication proteins [BR:dpy03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    BA022_13375
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     BA022_13375
DNA repair and recombination proteins [BR:dpy03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     BA022_13375
   NER (nucleotide excision repair)
    Other NER factors
     BA022_13375
   MMR (mismatch exicision repair)
    Other MMR factors
     BA022_13375
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C DUF3048 mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID: ASI69436
UniProt: A0A2Z2LM09
LinkDB All DBs
Position
complement(2927118..2928797)
Genome map
AA seq 559 aa AA seqDB search
MQAFAALYQALDASTSSLAKQAALRDYLRGAPPEDAAWAVYFLAGGKPRQLVPTKLLRAV
AREAAGLPEWLFDESYEAVGDLAETIALLLPPPTQAHALGLAAWMREHLLPLRGLAPDTQ
AERLGAQWARLAPEERLVYFKLITGAFRVGVSRLQVTQALAAVSGVDAKRIAQRLMGYTH
VGAQPGTADYQRLVAPEGDDAGAQAAEAQGHPYPFFLAHPLQLPVAQFDAALGPPADWIV
EWKWDGIRAQLVRRAGATWLWSRGEELVTDRFPELQALGDEALPDGTVLDGEIVVWQPAR
ADAPAQPRPFADLQKRIGRKSLGPKLLREVPVVLLAYDLLEEHGQDLRGLPLQARRARLD
ALLARTDHPALVPSPVLQGQSWAELARLRDSARALGVEGMMLKGRTAHYGVGRTRDVGIW
WKWKIDPMSVDAVLIYAQRGHGRRASLYSDYTFAVWSAPQGTEGRTLVPFAKAYSGLTDA
EMARVDAIIRKTTVESFGPVRSVRPTLVFELGFEGIARSARHKSGIAVRFPRMLRWREDK
PVDEADSLDTLAALLPATP
NT seq 1680 nt NT seq  +upstreamnt  +downstreamnt
atgcaggcctttgccgcgctctaccaggcgctggatgccagcacgtccagcctcgccaag
caggccgcgctgcgcgactatctgcggggtgcgccacccgaggatgccgcctgggccgtc
tacttcctcgcgggtggcaaaccacgccaactcgtgcccaccaagctgttgcgcgcggtg
gcgcgcgaggcggcggggttgccggaatggctgttcgacgaaagctacgaggctgtgggc
gatctggccgagaccatcgcactgctgctgcccccgcccacgcaggcgcacgccctgggg
ctggccgcatggatgcgcgaacacctcttgccgctgcgcggcctggcgcccgacacccag
gctgaacggctgggtgcgcaatgggcgcggctggcgcccgaggagcggctggtgtacttc
aagctcatcacgggggccttccgcgtgggcgtgtcgcgcttgcaggtcacgcaggcgctc
gcggccgtgagcggcgtggacgccaagcgcatcgcccagcgcctcatgggctacacccac
gtgggcgcgcagcccgggacggctgactaccagcgcctcgtggcgcccgagggagatgat
gcgggcgcgcaggctgcggaggcccagggccatccctatcccttctttctggcgcacccg
ctgcagctgccggtggcgcagtttgacgccgcgctcggcccgccggcggactggatcgtg
gaatggaagtgggacggcatccgcgcccagctcgtgcggcgcgcgggcgccacttggctg
tggtcgcgcggggaggagttggtgaccgatcgcttccccgaactgcaggcgctgggcgat
gaagccctgcccgacggcacggtgctcgacggcgagatcgtcgtctggcagcccgcgcga
gcggatgcgccggcgcagccgcgcccgtttgccgacctgcaaaagcgcatcggccgcaag
tcgctgggccccaagctgctgcgcgaggtgcccgtggtgctgctggcctacgacctgctg
gaggaacacggccaggacctgcgcggcctgccgctgcaggcgcggcgcgcgcgactggac
gcgctgctggcgcgcaccgaccacccggcgctggtgcccagcccggtgctgcagggacag
agctgggccgaactggcacgcctgcgggacagcgcgcgtgccctgggcgtggagggcatg
atgctcaaagggcgcacggcgcactatggtgtgggccgcacccgggacgtgggtatctgg
tggaagtggaagatcgacccgatgagcgtggacgccgtgctcatttatgcgcagcgcggc
cacgggcgccgcgccagcctgtacagcgactacacgttcgccgtgtggagtgcgccgcag
ggcaccgaggggcgcacgctggtgccgtttgccaaggcgtactcgggcctgaccgatgcc
gagatggcgagggtggacgccatcatccgcaagaccacggtggagagcttcggcccggtg
cgcagcgtgcggcccacgctggtgttcgagctgggctttgagggcatagcgcgcagcgcg
cggcacaagagcggcatcgccgtgcgcttcccgcgcatgctgcgctggcgtgaggacaag
ccggtggacgaggctgattcgctggatacgctggcagcgctgttgcctgctacgccatga

DBGET integrated database retrieval system