Danio rerio (zebrafish): 327078
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Entry
327078 CDS
T01004
Symbol
polr1a
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
dre
Danio rerio (zebrafish)
Pathway
dre03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
dre00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
327078 (polr1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dre03021
]
327078 (polr1a)
Enzymes [BR:
dre01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
327078 (polr1a)
Transcription machinery [BR:
dre03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
327078 (polr1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
HMG_box_2
Nop14
CDC45
Motif
Other DBs
NCBI-GeneID:
327078
NCBI-ProteinID:
XP_001922839
ZFIN:
ZDB-GENE-030131-5286
Ensembl:
ENSDARG00000098375
UniProt:
A0A0R4I9V4
LinkDB
All DBs
Position
14:16151639..16210891
Genome browser
AA seq
1693 aa
AA seq
DB search
MQFSKETPWRRLEGMSFGLFSADETRKLSVKTITNPQLLDNVGNAAANGLYDLALGPADN
KEICSTCMQDFSSCPGHFGHIELPLPVYNPLFFDKLYLLIRGSCLSCHILKCPRAAIHLL
LCQLKLLDVGAMKEVFEIENVLNQFLESNPSPPGEEIQETLNDFVKPILETRKDKQHTDP
VKHICEKKSSLITSFWRIHMGPKKCQNCKANRMTVRKEHNSKLIVTQTLHKKASEQDDDS
QLTKRIFLTPSVAREHIIKLWETEGFFLKHLFSGFDMDNSDNGFNPEVFFLELLVVPPCR
YRPINRLGDQMFTNGQTVNMQAVLKDGLIIQKLLTLIADEKTKAIEGTQTELEQSSEAPK
VTEIDQSFLTSIQGVTLTDKLYSTWIHLQSLVNIVFDSDMDKLITEKFPGVRQLLEKKEG
LFRKHMMGKRVDYAARSVICPDMYIGTNEIGIPMVFATKLTYPQPVTPWNVKEMRQAVLN
GPNIHPGATMVVNEDGSRTILSSTNQTQREAVAKQLLTPSTGQHRIPMKIVNRHIKNGDV
LLLNRQPTLHRPSIQAHCARILPGEKVLRLHYANCKAYNADFDGDEMNAHFPQSELSRAE
AYTLVSTDQQYLVPKDGKPLAGLIQDHMVSGTSMTIRGCFFTRDQYTALVYRGLTDKIGR
VKLLPPTLIKPVLLWTGKQVVSTLLLNVIPENSIPLNLTGKAKIPGKAWVKESPRPVPGY
VPESMCESQVVIRQGELLMGVLDKAHYGSSAYGLVHCCYELYGGETSGKLLSCLARLFTA
YLQLYRGFTLGVEDILVKDGANKQRKKIIKKSVTCGSKALQAAFNLPASAEDTEARERWQ
DAHLNIDQRDFNMVDLKFKEEVNQVNNNINKVCMPLGLHRSFPENNLQMMVQSGAKGSTV
NTMQISCLLGQIELEGRRPPLMPSGKSLPCFQPYEPQPRSGGFVTGRFLTGIKPPEFFFH
CMAGREGLVDTAVKTSRSGYLQRCVIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGLDIP
KTQFLQPRQFPFIKDNYEVIRKSKCLDEVLAKMDPVAALNHFKAIKKWKAKHEHASPRDG
AFLLFSQKKMSKLKAQVEGHELVNGREEATLQLIERWRALDESGRMRYSKKTSHCPEPCL
GLYRPDISFGSVSETFDSIVESYLNQFNIKQEFSASSETTDADRLRNLLQLKWQRALCDP
GEAVGLVAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILLVASSNIKTPMMSIP
VVMNKKALKQVKTLRKKITRVCLSEVLHKVNVIESFRMPKKETLKSRVFKITFHFLPPER
YQQDKLLNPDEILHYMEQTFFRMLLEAIKKLTAKLAAISLVETRRATVNDNDRDTSDGGA
DREDNGGEDAENERIVDDEANEGDADATDSKRKEKQEEEVDYESEEGEEGSDQEQEEVAE
EQEASQEVSEEGSTESQQRVNSEQPKGSSQGSVRINSVLQLSAAIEDYKYDTKKGLWCEL
TLVMPITKVHFDLTSVVVKQAQNAVIMETKGITRCLLNEVTRKDGSKEIMLNTEGINIHE
MFKYADILDLKRLYSNEVHAMASTYGIEVALRVIEKEIKDVFAVYGIEVDPRHLSLVADY
MCFEGVYKPLNRFGIQSNSSPLQQMTFETSFKFLKQATMLGSYDKLSSPSACLVVGKVVK
GGTGIFDLKQPLQ
NT seq
5082 nt
NT seq
+upstream
nt +downstream
nt
atgcaattttcaaaagaaacaccatggaggcgattagagggcatgtcgtttggcctgttc
tccgctgatgaaacaagaaaactgagtgtgaaaactatcacaaatcctcagttgctggat
aatgtgggcaatgctgctgcaaacgggctgtatgacctggcactcggtccggctgataac
aaggaaatctgttctacctgcatgcaagatttcagcagctgtcccggacactttggccac
atagagctgcccctgcctgtctacaaccctctgttttttgataaattatatttactcatc
cggggttcatgcctgtcatgtcacatactgaagtgtccaagagcagctattcatttactg
ctgtgccagctgaagctcctggacgtgggggccatgaaggaggtgtttgagattgaaaac
gttctcaatcagtttttggaatccaaccccagcccacctggagaagaaatccaagaaact
ctgaatgactttgttaaacccatcctcgaaaccagaaaagacaagcaacacactgaccct
gtcaagcacatctgtgagaaaaagtccagtctcattaccagtttctggagaatacatatg
ggcccaaaaaaatgccagaattgcaaagccaatagaatgactgtgcgcaaagaacacaac
agcaagctcatcgtcactcaaactttgcacaaaaaagcttctgaacaggatgatgattcc
caattgaccaaacgtatattcctgactccgagtgtggcacgagaacacatcatcaaactt
tgggagacagaaggttttttcctgaagcatttgttctcagggtttgacatggacaactct
gataatggctttaatcctgaagtttttttcttggagctgctggtggttcctccatgcagg
tacaggcctattaatcgtttgggagaccagatgttcaccaatggacagactgtgaacatg
caagctgtgttaaaggatggtttaatcattcagaaattactaacactaattgctgatgag
aaaaccaaggctattgaaggcacacagacagagctggagcagtccagtgaagccccaaag
gtcactgaaattgatcagagcttcctgacttccatccaaggagtgactctcacagacaag
ctctacagcacctggatccatttgcagagtcttgtcaacattgtgtttgacagcgacatg
gacaaattgatcactgagaagttcccaggcgtccggcagctgttggagaagaaagagggt
ttatttaggaagcacatgatgggaaagcgtgtggattacgctgcacgctctgtcatctgt
cctgatatgtacatcggaaccaatgaaattggaattccaatggtttttgctaccaagttg
acatatcctcaacctgtgacaccctggaacgtaaaggaaatgaggcaggcagtgctgaat
ggacccaacatccaccctggagccaccatggttgttaatgaagacgggtcccgcactatt
ctcagcagtaccaatcagacccaaagagaagctgtcgccaaacaactcctgacacccagc
actggccagcacaggatacccatgaaaattgtaaatcggcacatcaaaaatggcgatgtg
ctgctgttaaaccgtcagcccactctccacagaccatcaattcaggcccactgtgctcgg
atcctgcctggagagaaagtgctcaggttacattatgctaactgtaaggcctacaacgct
gactttgatggagatgagatgaatgcacacttccctcagagtgagctgagcagagctgag
gcctacacactagtgagcacagaccagcagtacttggtgccaaaagatgggaaaccattg
gcaggcttgattcaagatcacatggtttctggcaccagcatgaccatccgtggctgtttc
ttcacgagggatcagtacactgcactagtctacagaggcctgacagataagatcggcaga
gtcaagcttctccctcccacactcattaagcctgtgctgctgtggacaggaaagcaggtg
gtctcgacccttttgctgaatgtcatccctgaaaacagcattcctttaaacttgactgga
aaagcaaagattcctggtaaagcctgggtgaaggaatctcccagacctgttccaggatac
gtgccagaatccatgtgtgaatctcaggtggtcattcgtcagggagagctcttgatgggg
gttctggataaagctcactatgggagctcagcgtatggtctggtccactgctgctatgaa
ctctatggaggagagactagtgggaaactgcttagctgtctggcacggctcttcactgcc
tatctgcagctttaccgcgggtttactttgggtgtggaggacattcttgtaaaggatgga
gccaacaaacaaagaaaaaaaatcatcaaaaagtcagtcacatgtggctccaaggctctt
caggctgctttcaacctgcctgcttctgctgaagatactgaagccagagaacgctggcaa
gatgcacatctgaacatcgaccagagagatttcaacatggtagacctaaagtttaaagaa
gaggtcaatcaagtgaacaacaacatcaacaaggtctgcatgccactgggtctccaccgc
tcgttccctgaaaataacctacaaatgatggtgcagtcaggagccaaggggtctactgtt
aatactatgcagatatcctgtttgttgggtcaaattgagctggaaggccgccgaccacca
ctgatgccttcggggaagtctctaccctgctttcagccctatgagccacagcctcgctct
ggaggatttgtgactggcagatttctgactggaatcaaacctcctgaattcttctttcat
tgtatggctggtcgtgaaggtcttgtggacactgcagtgaaaaccagtcgatctggttac
ctgcaaaggtgtgtgattaagcatcttgaaggtttggtggtccagtatgatctgactgtg
cgggacagcgatggcagtgtggttcagtttctttatggagaggatgggttagacattccc
aaaacacaattcctacagccacgacagttccctttcatcaaagacaactatgaggttatc
aggaagtccaagtgcttggatgaagttttggctaaaatggacccagtggctgcattaaat
cactttaaagctataaagaaatggaaagccaagcatgagcatgcttcacccagagatggt
gccttcttactcttctcccagaagaagatgagcaagttgaaggctcaagtagagggtcat
gagctagtcaatgggagagaggaggccactttacagctcatagaaagatggagagctctg
gatgagtctggccggatgaggtattcaaagaagacttctcattgtccagaaccgtgtctg
ggtctttatcggccagacatcagctttggttcagtgtctgagacatttgactccattgtt
gagtcttatcttaatcagttcaacatcaagcaggaattttcggcatcttctgaaaccact
gacgcagataggttgagaaatctcctgcagctgaaatggcagagagctctgtgtgaccct
ggagaggctgtgggtctggttgcagctcagagcatcggtgaaccatccacacaaatgacc
ctcaacacctttcactttgccggcagaggagagatgaatgtcacactgggtattcccaga
ttaagagaaattctcttggttgcgagttctaacatcaaaactcccatgatgagtattcca
gttgtaatgaacaagaaagccttgaagcaggttaaaacactgcgcaagaagataacgcga
gtctgcttatcagaggtgctacataaagtaaatgtgatagaatctttccgaatgccgaag
aaggagaccctgaagtcacgagtcttcaaaatcacgttccacttcctgccacctgagcga
taccagcaagacaagctactcaaccctgatgagatccttcactacatggaacaaactttc
ttccgcatgctgttggaggccattaagaagctgactgcaaaattggctgccatcagtttg
gtggaaactcgtagagccacagtgaatgataatgatcgggataccagtgatggcggcgca
gacagagaggacaatgggggagaggatgcagaaaacgagaggattgtggatgatgaggcc
aatgaaggtgatgctgatgccacagattccaagagaaaagaaaagcaagaagaggaggta
gactatgagagcgaggagggagaggaaggcagtgatcaggagcaggaggaagtggctgag
gaacaggaggcgtctcaggaggtctctgaggaagggtctactgagagccaacagagagtt
aactctgaacagccgaagggaagctcacagggctcagtgaggatcaactctgtgctgcag
ttaagcgctgctattgaggactacaaatatgacaccaaaaaaggactgtggtgtgagtta
accctggtcatgccgatcactaaagtgcactttgacctcacctcagtggtggtgaaacag
gctcagaacgcggtcatcatggagaccaagggcatcacgcgctgtttgttaaatgaagtg
accagaaaagacggaagcaaagagattatgctcaacacagaaggcatcaacattcatgag
atgttcaaatatgctgatatcctggacttgaagagattatactccaatgaggttcatgcc
atggccagcacatatggtattgaggtggcccttagagtgatcgagaaggagattaaagat
gtgtttgctgtatacggtatcgaagtggatcctcgtcatctgtctttagttgctgattac
atgtgttttgagggagtgtacaagcctctcaatcgtttcggcattcagtccaacagctcc
ccactgcaacagatgacctttgagaccagcttcaagttcctgaagcaagccacgatgtta
ggttcttatgataaactcagttcgccctcagcttgtttggttgtaggaaaagttgtgaag
ggaggaactggaatatttgatctgaaacagccattacagtaa
DBGET
integrated database retrieval system