KEGG   Danio rerio (zebrafish): 327078
Entry
327078            CDS       T01004                                 
Symbol
polr1a
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA1
  KO
K02999  DNA-directed RNA polymerase I subunit RPA1 [EC:2.7.7.6]
Organism
dre  Danio rerio (zebrafish)
Pathway
dre03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:dre00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    327078 (polr1a)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:dre03021]
    327078 (polr1a)
Enzymes [BR:dre01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     327078 (polr1a)
Transcription machinery [BR:dre03021]
 Eukaryotic type
  RNA polymerase I system
   RNA polymerase I
    Core subunits
     327078 (polr1a)
SSDB
Motif
Pfam: RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_1 RNA_pol_Rpb1_4 HMG_box_2 Nop14 CDC45
Other DBs
NCBI-GeneID: 327078
NCBI-ProteinID: XP_001922839
ZFIN: ZDB-GENE-030131-5286
Ensembl: ENSDARG00000098375
UniProt: A0A0R4I9V4
LinkDB
Position
14:16151639..16210891
AA seq 1693 aa
MQFSKETPWRRLEGMSFGLFSADETRKLSVKTITNPQLLDNVGNAAANGLYDLALGPADN
KEICSTCMQDFSSCPGHFGHIELPLPVYNPLFFDKLYLLIRGSCLSCHILKCPRAAIHLL
LCQLKLLDVGAMKEVFEIENVLNQFLESNPSPPGEEIQETLNDFVKPILETRKDKQHTDP
VKHICEKKSSLITSFWRIHMGPKKCQNCKANRMTVRKEHNSKLIVTQTLHKKASEQDDDS
QLTKRIFLTPSVAREHIIKLWETEGFFLKHLFSGFDMDNSDNGFNPEVFFLELLVVPPCR
YRPINRLGDQMFTNGQTVNMQAVLKDGLIIQKLLTLIADEKTKAIEGTQTELEQSSEAPK
VTEIDQSFLTSIQGVTLTDKLYSTWIHLQSLVNIVFDSDMDKLITEKFPGVRQLLEKKEG
LFRKHMMGKRVDYAARSVICPDMYIGTNEIGIPMVFATKLTYPQPVTPWNVKEMRQAVLN
GPNIHPGATMVVNEDGSRTILSSTNQTQREAVAKQLLTPSTGQHRIPMKIVNRHIKNGDV
LLLNRQPTLHRPSIQAHCARILPGEKVLRLHYANCKAYNADFDGDEMNAHFPQSELSRAE
AYTLVSTDQQYLVPKDGKPLAGLIQDHMVSGTSMTIRGCFFTRDQYTALVYRGLTDKIGR
VKLLPPTLIKPVLLWTGKQVVSTLLLNVIPENSIPLNLTGKAKIPGKAWVKESPRPVPGY
VPESMCESQVVIRQGELLMGVLDKAHYGSSAYGLVHCCYELYGGETSGKLLSCLARLFTA
YLQLYRGFTLGVEDILVKDGANKQRKKIIKKSVTCGSKALQAAFNLPASAEDTEARERWQ
DAHLNIDQRDFNMVDLKFKEEVNQVNNNINKVCMPLGLHRSFPENNLQMMVQSGAKGSTV
NTMQISCLLGQIELEGRRPPLMPSGKSLPCFQPYEPQPRSGGFVTGRFLTGIKPPEFFFH
CMAGREGLVDTAVKTSRSGYLQRCVIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGLDIP
KTQFLQPRQFPFIKDNYEVIRKSKCLDEVLAKMDPVAALNHFKAIKKWKAKHEHASPRDG
AFLLFSQKKMSKLKAQVEGHELVNGREEATLQLIERWRALDESGRMRYSKKTSHCPEPCL
GLYRPDISFGSVSETFDSIVESYLNQFNIKQEFSASSETTDADRLRNLLQLKWQRALCDP
GEAVGLVAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILLVASSNIKTPMMSIP
VVMNKKALKQVKTLRKKITRVCLSEVLHKVNVIESFRMPKKETLKSRVFKITFHFLPPER
YQQDKLLNPDEILHYMEQTFFRMLLEAIKKLTAKLAAISLVETRRATVNDNDRDTSDGGA
DREDNGGEDAENERIVDDEANEGDADATDSKRKEKQEEEVDYESEEGEEGSDQEQEEVAE
EQEASQEVSEEGSTESQQRVNSEQPKGSSQGSVRINSVLQLSAAIEDYKYDTKKGLWCEL
TLVMPITKVHFDLTSVVVKQAQNAVIMETKGITRCLLNEVTRKDGSKEIMLNTEGINIHE
MFKYADILDLKRLYSNEVHAMASTYGIEVALRVIEKEIKDVFAVYGIEVDPRHLSLVADY
MCFEGVYKPLNRFGIQSNSSPLQQMTFETSFKFLKQATMLGSYDKLSSPSACLVVGKVVK
GGTGIFDLKQPLQ
NT seq 5082 nt   +upstreamnt  +downstreamnt
atgcaattttcaaaagaaacaccatggaggcgattagagggcatgtcgtttggcctgttc
tccgctgatgaaacaagaaaactgagtgtgaaaactatcacaaatcctcagttgctggat
aatgtgggcaatgctgctgcaaacgggctgtatgacctggcactcggtccggctgataac
aaggaaatctgttctacctgcatgcaagatttcagcagctgtcccggacactttggccac
atagagctgcccctgcctgtctacaaccctctgttttttgataaattatatttactcatc
cggggttcatgcctgtcatgtcacatactgaagtgtccaagagcagctattcatttactg
ctgtgccagctgaagctcctggacgtgggggccatgaaggaggtgtttgagattgaaaac
gttctcaatcagtttttggaatccaaccccagcccacctggagaagaaatccaagaaact
ctgaatgactttgttaaacccatcctcgaaaccagaaaagacaagcaacacactgaccct
gtcaagcacatctgtgagaaaaagtccagtctcattaccagtttctggagaatacatatg
ggcccaaaaaaatgccagaattgcaaagccaatagaatgactgtgcgcaaagaacacaac
agcaagctcatcgtcactcaaactttgcacaaaaaagcttctgaacaggatgatgattcc
caattgaccaaacgtatattcctgactccgagtgtggcacgagaacacatcatcaaactt
tgggagacagaaggttttttcctgaagcatttgttctcagggtttgacatggacaactct
gataatggctttaatcctgaagtttttttcttggagctgctggtggttcctccatgcagg
tacaggcctattaatcgtttgggagaccagatgttcaccaatggacagactgtgaacatg
caagctgtgttaaaggatggtttaatcattcagaaattactaacactaattgctgatgag
aaaaccaaggctattgaaggcacacagacagagctggagcagtccagtgaagccccaaag
gtcactgaaattgatcagagcttcctgacttccatccaaggagtgactctcacagacaag
ctctacagcacctggatccatttgcagagtcttgtcaacattgtgtttgacagcgacatg
gacaaattgatcactgagaagttcccaggcgtccggcagctgttggagaagaaagagggt
ttatttaggaagcacatgatgggaaagcgtgtggattacgctgcacgctctgtcatctgt
cctgatatgtacatcggaaccaatgaaattggaattccaatggtttttgctaccaagttg
acatatcctcaacctgtgacaccctggaacgtaaaggaaatgaggcaggcagtgctgaat
ggacccaacatccaccctggagccaccatggttgttaatgaagacgggtcccgcactatt
ctcagcagtaccaatcagacccaaagagaagctgtcgccaaacaactcctgacacccagc
actggccagcacaggatacccatgaaaattgtaaatcggcacatcaaaaatggcgatgtg
ctgctgttaaaccgtcagcccactctccacagaccatcaattcaggcccactgtgctcgg
atcctgcctggagagaaagtgctcaggttacattatgctaactgtaaggcctacaacgct
gactttgatggagatgagatgaatgcacacttccctcagagtgagctgagcagagctgag
gcctacacactagtgagcacagaccagcagtacttggtgccaaaagatgggaaaccattg
gcaggcttgattcaagatcacatggtttctggcaccagcatgaccatccgtggctgtttc
ttcacgagggatcagtacactgcactagtctacagaggcctgacagataagatcggcaga
gtcaagcttctccctcccacactcattaagcctgtgctgctgtggacaggaaagcaggtg
gtctcgacccttttgctgaatgtcatccctgaaaacagcattcctttaaacttgactgga
aaagcaaagattcctggtaaagcctgggtgaaggaatctcccagacctgttccaggatac
gtgccagaatccatgtgtgaatctcaggtggtcattcgtcagggagagctcttgatgggg
gttctggataaagctcactatgggagctcagcgtatggtctggtccactgctgctatgaa
ctctatggaggagagactagtgggaaactgcttagctgtctggcacggctcttcactgcc
tatctgcagctttaccgcgggtttactttgggtgtggaggacattcttgtaaaggatgga
gccaacaaacaaagaaaaaaaatcatcaaaaagtcagtcacatgtggctccaaggctctt
caggctgctttcaacctgcctgcttctgctgaagatactgaagccagagaacgctggcaa
gatgcacatctgaacatcgaccagagagatttcaacatggtagacctaaagtttaaagaa
gaggtcaatcaagtgaacaacaacatcaacaaggtctgcatgccactgggtctccaccgc
tcgttccctgaaaataacctacaaatgatggtgcagtcaggagccaaggggtctactgtt
aatactatgcagatatcctgtttgttgggtcaaattgagctggaaggccgccgaccacca
ctgatgccttcggggaagtctctaccctgctttcagccctatgagccacagcctcgctct
ggaggatttgtgactggcagatttctgactggaatcaaacctcctgaattcttctttcat
tgtatggctggtcgtgaaggtcttgtggacactgcagtgaaaaccagtcgatctggttac
ctgcaaaggtgtgtgattaagcatcttgaaggtttggtggtccagtatgatctgactgtg
cgggacagcgatggcagtgtggttcagtttctttatggagaggatgggttagacattccc
aaaacacaattcctacagccacgacagttccctttcatcaaagacaactatgaggttatc
aggaagtccaagtgcttggatgaagttttggctaaaatggacccagtggctgcattaaat
cactttaaagctataaagaaatggaaagccaagcatgagcatgcttcacccagagatggt
gccttcttactcttctcccagaagaagatgagcaagttgaaggctcaagtagagggtcat
gagctagtcaatgggagagaggaggccactttacagctcatagaaagatggagagctctg
gatgagtctggccggatgaggtattcaaagaagacttctcattgtccagaaccgtgtctg
ggtctttatcggccagacatcagctttggttcagtgtctgagacatttgactccattgtt
gagtcttatcttaatcagttcaacatcaagcaggaattttcggcatcttctgaaaccact
gacgcagataggttgagaaatctcctgcagctgaaatggcagagagctctgtgtgaccct
ggagaggctgtgggtctggttgcagctcagagcatcggtgaaccatccacacaaatgacc
ctcaacacctttcactttgccggcagaggagagatgaatgtcacactgggtattcccaga
ttaagagaaattctcttggttgcgagttctaacatcaaaactcccatgatgagtattcca
gttgtaatgaacaagaaagccttgaagcaggttaaaacactgcgcaagaagataacgcga
gtctgcttatcagaggtgctacataaagtaaatgtgatagaatctttccgaatgccgaag
aaggagaccctgaagtcacgagtcttcaaaatcacgttccacttcctgccacctgagcga
taccagcaagacaagctactcaaccctgatgagatccttcactacatggaacaaactttc
ttccgcatgctgttggaggccattaagaagctgactgcaaaattggctgccatcagtttg
gtggaaactcgtagagccacagtgaatgataatgatcgggataccagtgatggcggcgca
gacagagaggacaatgggggagaggatgcagaaaacgagaggattgtggatgatgaggcc
aatgaaggtgatgctgatgccacagattccaagagaaaagaaaagcaagaagaggaggta
gactatgagagcgaggagggagaggaaggcagtgatcaggagcaggaggaagtggctgag
gaacaggaggcgtctcaggaggtctctgaggaagggtctactgagagccaacagagagtt
aactctgaacagccgaagggaagctcacagggctcagtgaggatcaactctgtgctgcag
ttaagcgctgctattgaggactacaaatatgacaccaaaaaaggactgtggtgtgagtta
accctggtcatgccgatcactaaagtgcactttgacctcacctcagtggtggtgaaacag
gctcagaacgcggtcatcatggagaccaagggcatcacgcgctgtttgttaaatgaagtg
accagaaaagacggaagcaaagagattatgctcaacacagaaggcatcaacattcatgag
atgttcaaatatgctgatatcctggacttgaagagattatactccaatgaggttcatgcc
atggccagcacatatggtattgaggtggcccttagagtgatcgagaaggagattaaagat
gtgtttgctgtatacggtatcgaagtggatcctcgtcatctgtctttagttgctgattac
atgtgttttgagggagtgtacaagcctctcaatcgtttcggcattcagtccaacagctcc
ccactgcaacagatgacctttgagaccagcttcaagttcctgaagcaagccacgatgtta
ggttcttatgataaactcagttcgccctcagcttgtttggttgtaggaaaagttgtgaag
ggaggaactggaatatttgatctgaaacagccattacagtaa

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