Danio rerio (zebrafish): 393717
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Entry
393717 CDS
T01004
Symbol
smfn
Name
(RefSeq) small fragment nuclease precursor
KO
K13288
oligoribonuclease [EC:3.1.-.-]
Organism
dre
Danio rerio (zebrafish)
Pathway
dre03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
dre00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
393717 (smfn)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dre03019
]
393717 (smfn)
03009 Ribosome biogenesis [BR:
dre03009
]
393717 (smfn)
Messenger RNA biogenesis [BR:
dre03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
393717 (smfn)
Ribosome biogenesis [BR:
dre03009
]
Eukaryotic type
Pre-60S particles
RNases
393717 (smfn)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
Rv2179c-like
KDM5_C-hel
Motif
Other DBs
NCBI-GeneID:
393717
NCBI-ProteinID:
NP_957038
ZFIN:
ZDB-GENE-040426-1709
Ensembl:
ENSDARG00000009806
UniProt:
F1QNX9
LinkDB
All DBs
Position
10:39893447..39905253
Genome browser
AA seq
259 aa
AA seq
DB search
MWRAVPCVSAFRALTRVCVFSQRVKLCSPVFPAHNFSHFSARSSVPSKGLMSRRRAPSRK
MSQIQAQRMVWVDLEMTGLDIEKDQIIEMACIVTDSDLNVIAEGPNLIINQPDDLLDGMS
DWCKEHHGKSGLTQAVRDSHITLQQAEYEFLSFIRQHTPPGVCPLAGNSVHADKKFLDKY
MPQFMHHLHYRIIDVSTIKELSRRWYPEEYNLAPQKKSSHRALDDIQESIKELQFYRTSV
FKAKEKKKIVENGNKTSTS
NT seq
780 nt
NT seq
+upstream
nt +downstream
nt
atgtggagagcggtgccgtgtgtttctgcattcagggcgctgactcgagtctgtgtgttt
tcacaacgggttaaactttgctcaccagtgtttccagcccacaacttctctcatttcagt
gcacgtagctctgtgccatccaagggtttgatgtcaagaagacgagcacccagcaggaag
atgtctcagatccaagctcaacggatggtctgggtggatctggagatgacaggactggat
atcgaaaaggaccagattattgaaatggcttgcattgttacagactctgacctgaatgtc
attgcagaagggccaaatctgatcatcaaccaaccagacgatctacttgacggcatgtca
gactggtgcaaagagcatcatgggaaatcagggttaacacaggcagtcagggacagtcac
atcactctccagcaggcagagtacgagtttctgtcattcattcgacagcacacaccgccc
ggagtgtgtcctctcgcagggaactctgttcacgccgacaagaagtttctggataaatac
atgcctcagttcatgcaccacctgcactatcgcatcatagatgtgagcaccattaaagag
ctctccagacggtggtatccagaggagtacaatctcgcaccgcaaaaaaaatcctctcac
agagcgctggacgacatccaggagagcattaaagaactgcagttttacagaacgagtgtt
ttcaaagccaaggagaagaaaaaaattgttgaaaatggcaataagacgtccacaagctaa
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integrated database retrieval system
