Desulforamulus reducens: Dred_0208
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Entry
Dred_0208 CDS
T00494
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
drm
Desulforamulus reducens
Pathway
drm03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
drm00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Dred_0208
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
drm03021
]
Dred_0208
03400 DNA repair and recombination proteins [BR:
drm03400
]
Dred_0208
Enzymes [BR:
drm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Dred_0208
Transcription machinery [BR:
drm03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Dred_0208
DNA repair and recombination proteins [BR:
drm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Dred_0208
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
ABO48757
UniProt:
A4J104
LinkDB
All DBs
Position
223489..227046
Genome browser
AA seq
1185 aa
AA seq
DB search
MLELNNFDSIRIGLASPDKIRQWSSGEVKKPETINYRTLKPERDGLFCERIFGPTRDWEC
HCGKYKRVRYKGVVCDRCGVEVTRSKVRRERLGHIELAAPVSHIWYFKGIPSRMGLLLDM
SPRALEKVLYFVSYIVIEPGDTPLLKKQLLTETEYREYRDKFGNNFKAGMGAEAIKVLLV
EINLEELARELRQELKEVSGQRKIRAIRRLEVVEAFKKSGNRPEWMIMDVVPVIPPELRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPDIIVRNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPRLKMHQCGLPKE
MALELFKPFVMKKLVNDGHAHNIKSAKRMVERVRPEVWDVLEDVIKEHPVMLNRAPTLHR
LGIQAFEPVLVEGRAIKIHPMVCTAYNADFDGDQMAVHVPLSAEAQAEARLLMLAANNIL
NPKDGKPVASPTQDMVLGSYYLTMDRDGDLGEGLIFKDEQEAMLAYDNKQVSLQAKITVR
RKNGERLQTTVGRIIFNEVIPEELGYINKVCDKKTLSKIVADCYRRLGNAHTAELLDGIK
ELGYKYSTRAGITIGVPDITIPEAKKEILAKAEEQVNKIETQFRRGLITEDERYRKVIGI
WNDATDKVTKALMATLDKFNNVYMMATSGARGNIQQIRQLAGMRGLMADPSGRIIDLPIK
ANFREGLTVLEYFISTHGARKGLADTALRTADSGYLTRRLVDVAQDVIVREDDCGTTEGI
EVREIRDGTEGIEKLHERLEGRVPMEVVVHPETGEVLISQEQVDNHQVMTEEQAQAIEDA
GIEKVKIRSVITCKTRYGVCKHCYGKNLATGGNIDIGEAVGIIAAQSIGEPGTQLTMRTF
HTGGVAGDDITQGLPRVEELFEARRPKGQAIVAEEDGSIAIREVKGRREIEITKDNGEKN
VYAVPFGARIKVKEGQRIEAGDELTEGSVNPHDLLKIKGPAGVQVYLLQEVQRVYRLQGV
EINDKHIEVMIRQMLRKVKIEEAGDTELLPGGLIDIFEFEEENRKAVEQGGEPAVAKPVL
LGITKASLATDSFLSAASFQETTRVLTEAAIKGKMDPLLGLKENVIIGKLVPAGTGMSRY
RNIEVLEEGQPFLEEDRDILLPERDRDYNFLSDEEKIDFDLTLEK
NT seq
3558 nt
NT seq
+upstream
nt +downstream
nt
ttgttagagctaaataactttgatagtatacgtatcggccttgcctcaccggacaagatt
cgtcaatggtccagtggggaggtaaaaaaaccggaaaccatcaactaccggacattgaag
ccagaacgtgacggtttattctgtgaacgtatctttggccccaccagggattgggaatgt
cactgcggaaagtacaaacgtgtccgctacaaaggcgttgtctgcgaccgctgcggtgtt
gaagtaacccgctccaaggttcgccgagaaaggctaggacacattgaactggcagcccca
gtatctcatatttggtactttaaagggattcctagccgcatggggttgctactggatatg
tcacccagagcattggaaaaagtactgtattttgtttcttacattgttatcgagccgggc
gatactcctctgttgaaaaaacagttacttactgaaaccgagtatcgggaatatagggat
aaatttggcaataatttcaaggcaggcatgggcgctgaagccattaaggtcttgctggtg
gaaataaacctggaggaattggccagggaactgcgccaggaactaaaggaggtttctggc
cagcgtaagatccgtgccatacgtcggctggaagtcgtagaggcctttaagaaatctggc
aaccgaccagagtggatgatcatggacgtagttccagttattcctccagaactaagacct
atggtacagttggatggtggacgtttcgctacttcggatttaaatgacctttatcggcgg
gttattaaccgaaacaatcgtttgaaacgcttgcttgatttaggcgcaccggacatcatc
gtaagaaacgaaaagcgaatgttgcaggaagctgtggatgctctcatcgataatggacga
cgtggccgacctgtaacaggccctggcaatcgtccgttaaaatccctgtcagacatgcta
aaggggaaacaaggacgcttccgccaaaacctactgggtaaaagggttgactactccggt
cgttcggttatcgtagtaggaccacgtttaaagatgcaccaatgcggtttgcccaaggaa
atggcactggagctcttcaaaccctttgttatgaaaaagctggtcaatgatggccatgcc
cataacattaagagtgctaagcgtatggtagaacgggtacgtccggaggtatgggatgtt
cttgaagatgtgattaaagaacatccagttatgctaaaccgtgccccaaccctacaccgt
ttgggtattcaagcctttgagccagttttagtagagggtcgtgccattaaaattcacccc
atggtttgtacagcctataacgcggattttgacggtgaccaaatggcagttcacgtaccg
ctgtctgctgaggctcaggcagaagctaggcttctcatgctggctgctaataacatcctg
aaccccaaggacggcaagcctgtggccagtcctactcaggacatggtattgggttcctat
tacctgaccatggacagagatggtgatttaggcgagggactgatctttaaagatgagcag
gaggccatgctggcctatgataacaagcaagtatccttacaggctaaaattaccgtacgc
cggaaaaatggtgagcggttacaaactaccgttggcaggattatcttcaatgaggtaatc
cccgaggagttaggatacattaataaagtttgcgacaaaaagacactaagcaaaattgtt
gcagattgctaccgccgccttggaaatgctcatactgcggaactactggatggcattaaa
gagctgggttataaatattcaacccgggcgggcatcaccattggggtgccggatattact
attccggaagccaagaaggagattcttgccaaggctgaggagcaagttaataagatcgaa
acccaattccgtcggggtctgattacggaagacgagcgttaccgtaaagtaattggtatc
tggaatgacgctactgataaagtaaccaaagccttgatggccacactggataagtttaac
aatgtttacatgatggctacctctggtgcccgtggtaacatccagcagattcgtcagctg
gccggtatgcgtggtctaatggcagacccctccggacgaattattgacctgccaattaaa
gcaaacttccgggaaggcttaaccgtattggaatactttatttccacccacggtgctcgg
aaaggtttggctgataccgccctgcgtacggctgactccggttacttgactcgcagactg
gtggatgtggcccaggacgttatagtacgggaagatgactgtggcaccaccgagggaatt
gaagtcagagaaattagagatggtaccgaaggtattgaaaaactccatgaacgtctggaa
ggccgggtaccaatggaagtggttgttcacccagaaacaggggaagtgctcatttcccag
gagcaggtagataaccatcaagtgatgaccgaagaacaggcccaggccattgaagacgca
ggcattgaaaaggtaaaaattagatcggttattacctgcaaaacccgctacggtgtgtgt
aaacactgctatggtaagaacctggcaacaggtggcaacattgatattggtgaagccgtg
ggtatcattgcagcccagtccattggtgagcctggcacacagttaaccatgcgtaccttc
cacaccggtggtgtagccggagatgatattacacaaggtcttccgagggttgaagaactg
tttgaggcccgtagacctaagggtcaggccattgtggcagaagaggacggcagcattgct
atacgggaagtaaagggtcgcagggaaattgaaatcaccaaggacaatggtgaaaagaat
gtctatgccgttccctttggcgctagaatcaaagtaaaagaaggccagcgcattgaggcc
ggtgacgaattgacagagggttccgttaacccgcacgacctcttaaagattaagggacca
gcaggagtgcaagtatatctgctgcaggaagtacaaagggtatatcgcctgcagggtgtg
gaaattaacgacaagcacatcgaagttatgattcgtcaaatgttgagaaaagtgaagatt
gaagaagctggtgatacagaattactacccggtggccttattgatatttttgaatttgaa
gaggaaaatcgtaaggccgttgagcaaggtggagaacctgctgtagccaaaccggtacta
ttgggtattaccaaggcttctcttgccacagattccttcttatccgcagcgtccttccaa
gagaccactcgggtactaaccgaagcagctatcaaaggaaagatggacccgctgcttggt
ctcaaagaaaacgttattatcggtaagctggttccggcaggtacaggcatgtcacgctat
cgcaatatagaagtgctggaagaaggtcagccattcctggaggaagacagggatatactg
cttcctgaaagggaccgggactacaacttcctttcagatgaagagaagattgatttcgac
ctgacacttgaaaaataa
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