Desulforamulus reducens: Dred_1919
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Entry
Dred_1919 CDS
T00494
Name
(GenBank) metal dependent phosphohydrolase
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
drm
Desulforamulus reducens
Pathway
drm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
drm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Dred_1919
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
drm03019
]
Dred_1919
Messenger RNA biogenesis [BR:
drm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Dred_1919
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KhpA-B_KH
DUF5662
DUF3450
Bacillus_HBL
UPF0154
KH_2
LapA_dom
FUT8_N_cat
Motif
Other DBs
NCBI-ProteinID:
ABO50440
UniProt:
A4J5T7
LinkDB
All DBs
Position
complement(2107082..2108620)
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AA seq
512 aa
AA seq
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MEFQIILVVIISALVGLVIGFFIRKNIAEGKITSAEAQAKRILEEAEKNAEGKKREAIVM
AKEEVLKLRNEMEREIRDRRNELQRLERRLLQKEETLDRKMDSMEKKEESLSRKEADIEN
TKAELTNVLNRQLAELERVSGLSSEEARQILLNDVEKELQHDMAVMIKDFENRAKEEADK
KARDIISSAIQRCAADHVAEATVAVIPLPNDEMKGRIIGREGRNIRAFETLTGIDLIIDD
TPEAVILSGFDPIRREVARLALERLISDGRIHPARIEEMVEKAQKDVEVQIREAGEQATF
ETGVHGLHPELVKLLGRLKFRTSYGQNVLKHSIEVCHLAGLMAAELGIDVKLAKRAGLLH
DIGKAVDHEVEGPHVAIGVNLCQKYKESPEVIHAIAAHHGDEEPRTIEAVLVQAADAISA
ARPGARRETLESYIKRLQKLEEIAGTFEGVEKSFAIQAGREIRIMVKPDKIDDLAAIRLV
RDIAKKIENELDYPGQIKVIIIRETRYVEYAK
NT seq
1539 nt
NT seq
+upstream
nt +downstream
nt
gtggagtttcaaataattttagtggttattatttccgctttggttggacttgtaattggt
ttttttattcgaaagaatattgccgagggtaaaataacatcggctgaagcccaggctaag
agaattcttgaagaggctgagaagaatgctgagggcaaaaaacgggaagccattgttatg
gcaaaggaagaagttctaaaactacggaacgaaatggaaagagaaataagggaccgtaga
aatgaactgcaacggttagaaagaaggcttctgcaaaaagaggagactctagacaggaaa
atggattccatggaaaagaaagaggaatccttaagtcgcaaagaagctgacattgaaaat
accaaggctgagcttactaatgttttaaatcggcagttagctgagttggagcgagtatcg
gggctttcatcggaagaggctcgccagatactgttaaatgatgtggagaaagagcttcaa
cacgatatggctgtgatgattaaagactttgaaaaccgtgctaaagaagaagcggataag
aaggcacgggacattatttcgtcagctattcaaagatgtgcagcagaccatgttgcagag
gccactgttgctgttataccattgccaaatgacgaaatgaagggtcgtataatcggtagg
gaaggtcgtaatattcgggcctttgaaaccctaacaggtattgatttaattattgatgat
acgcctgaggcagttatcctttcaggttttgatcccattcgtcgagaagtggcaagattg
gcacttgaaaggctaatctccgatggacgtatacaccctgccagaattgaagagatggtt
gagaaggctcagaaagatgtagaagtacagatacgtgaagcaggtgaacaggctaccttt
gaaacaggtgtccatggccttcaccctgagctggtaaaactacttggacgtctgaagttt
cgtaccagttatgggcagaatgtcttaaaacattccattgaggtctgtcacctagcagga
ctcatggcagcagaactgggtatagatgttaaacttgcgaaacgtgctgggttattgcac
gacattgggaaagctgttgaccatgaggtggaaggacctcacgtagctatcggtgtaaac
ctttgtcaaaaatataaggaaagtccagaagttattcatgccatcgcagcacatcacgga
gatgaagagccaagaaccatagaagctgtcttggtacaagctgctgatgcaatatcagcc
gcacgccctggtgctagaagagagactttggaatcctatattaagcgattgcagaaattg
gaagaaattgcaggcacctttgaaggtgttgaaaaatcctttgctattcaggcaggaaga
gaaatccgaattatggttaaaccagataaaatagatgatctggctgctattcgcctagta
agggatattgctaaaaagattgaaaatgaactggattatcccggtcaaattaaagttatt
attattcgggaaaccaggtatgttgaatatgctaaataa
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