KEGG   Dichomitus squalens: DICSQDRAFT_164573Help
Entry
DICSQDRAFT_164573 CDS       T03133                                 

Definition
(RefSeq) ATP-dependent DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
dsq  Dichomitus squalens
Pathway
dsq03030  DNA replication
dsq03410  Base excision repair
dsq03420  Nucleotide excision repair
dsq03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:dsq00001]
 Genetic Information Processing
  Replication and repair
   03030 DNA replication
    DICSQDRAFT_164573
   03410 Base excision repair
    DICSQDRAFT_164573
   03420 Nucleotide excision repair
    DICSQDRAFT_164573
   03430 Mismatch repair
    DICSQDRAFT_164573
Enzymes [BR:dsq01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     DICSQDRAFT_164573
    6.5.1.6  DNA ligase (ATP or NAD+)
     DICSQDRAFT_164573
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     DICSQDRAFT_164573
DNA replication proteins [BR:dsq03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    DICSQDRAFT_164573
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     DICSQDRAFT_164573
DNA repair and recombination proteins [BR:dsq03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     DICSQDRAFT_164573
   NER (nucleotide excision repair)
    Other NER factors
     DICSQDRAFT_164573
   MMR (mismatch exicision repair)
    Other MMR factors
     DICSQDRAFT_164573
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase eIF-3c_N
Motif
Other DBs
NCBI-GeneID: 18838351
NCBI-ProteinID: XP_007360230
JGI: 164573
LinkDB All DBs
Position
Unknown
AA seq 834 aa AA seqDB search
MVRQQTLGKFFGKGGDPPVQTTLDNAFGGKRKRSTKAEKEEDAVDAKGGVGDSEKVVAAT
RSPSPAKHPKPKPPASKKRRVIQSDDEDDSGPGPSNTKQTRAGSQKPPSSNTTAKPNSVP
SAPSKSGPNAKANKVVAVAEPIDEDDAAVSSAVEEDPDEGEEEVDADEDLEEEEEGGVAS
QNAEAALLKIEEVDLPNGWNVGEPVPYAALAKVFSLIEATTKRIEKTSLLTSFLLLVIRR
RAEGVTQSLLQAVYLCINRLCPDYMGIELGIGESLLVKAISESTGRSLATVKADLKKEGD
LGLVAMNSKNSQKTLFKPKPLTLPTVFKNLKEIAMSSGHSSQNKKVSIITKLLASCQGQE
AKYIIRSLEGKLRIGNAERTVLVALAHAAVLAEQESANKRLNTEKLAARLEEAAGIIKQV
YSELPNYDLVIPALLNAGIDGLKEKCKLSPGVPLKPMLAKPTKAIGEVLDKFEGKKFTCE
YKYDGERAQVHKLADGTIAVFSRNSEDMSKKYPDLMEQLPRCVKEGTETFVFDAEAVAID
KDTAKLLPFQELSRRKRKDVKVEDIKVRVCLFAFDLLYLNGEPLLQKDFAERRALLQEHF
QPVEHEFQFAKASDAETVDEIQTFLEESVKDGCEGLMVKMLEGEFSHYQPSRRTVNWLKL
KKDYLAGVGDSLDLVVVGGYFGKGKRTNVYGAFLLACYDADAEEYQTICKIGTGFSDEAL
QAHYETLKPLEVHAPRGDIKIGGAKPDVWFEPKVVWEVLTADLSLSPIYTAAQGLVEERG
ISLRFPRFIKIREDKDADDATGPEQIAEMYQRQALAQTKGGKKSKGGDGDDGFW
NT seq 2505 nt NT seq  +upstreamnt  +downstreamnt
atggtccgccaacagactctgggcaagttctttgggaagggaggggatccccccgttcaa
accacactggacaacgcgttcggtgggaagaggaaacgcagtacgaaagcagagaaggag
gaggatgcagtggatgcaaaagggggggtcggtgattctgagaaagtggtggcggcgaca
cgctctccatcaccggccaaacatcccaagccgaagccaccagcgtcgaagaaacgacga
gtgatccaatccgacgatgaggatgattcgggacctggtccgtccaatacgaagcagacg
cgggcgggctcacagaaaccaccgtcctcaaacactacggcaaagcccaatagtgttccg
agcgcaccatcgaaatcgggacccaatgccaaggcgaacaaggttgtggcggtggctgaa
cctatagatgaagatgacgccgctgtctcatccgctgtcgaagaagacccggatgaaggc
gaggaagaggttgatgcggatgaggacttggaggaggaagaggagggcggcgttgcgtca
cagaacgccgaagcagcactattgaagatcgaggaggtcgacctccctaacggctggaac
gtcggagaacctgtgccctatgccgcgttggccaaggtgttttcgctgattgaggcgacc
accaaacgcatcgagaagacctccttattgacatccttcttgcttttggtcattcgacgg
agagcagagggggttacgcaatccctgctccaagcagtctacctctgcattaaccgactc
tgccctgactatatggggatcgagctaggtatcggcgagagtttgctggtcaaggccatc
agtgagtctacaggccgaagtctggcgaccgtcaaggcagacttgaagaaggagggtgac
ctcgggctcgtcgctatgaactccaagaatagccagaagacgctcttcaagcctaaacca
ctgactcttcccaccgtgttcaagaatctcaaagagatcgctatgagcagcgggcactct
tcacaaaacaagaaagtgtccatcatcacgaagctgctcgcatcttgtcagggccaggaa
gcgaagtacattatccgcagtctagaaggcaagctccgaataggtaacgccgagcgcacc
gtccttgttgcactagcgcatgccgctgtcctcgctgaacaggaaagcgcgaacaagagg
ctgaatacggagaagcttgctgcccggcttgaagaggctgccgggatcatcaagcaggtg
tacagcgaacttccgaactacgacctcgttattcccgctctcctcaatgccggcattgac
ggccttaaggagaagtgcaaactcagtcctggggtgccccttaagcctatgctggccaag
cctacgaaggctataggagaggtcctcgacaagttcgagggcaagaaattcacatgcgag
tacaagtacgatggcgagcgcgcacaggtccacaagctcgcagacggcactattgccgtg
ttcagccgcaattccgaggacatgagcaagaagtaccccgatctcatggaacaattgccc
cggtgtgtcaaggagggcacggaaaccttcgtgtttgatgccgaggcggtggctatagac
aaagacactgcgaagctcctccccttccaagagctctctaggcgcaagcggaaggatgtc
aaggtggaggacatcaaagtccgcgtgtgcctgttcgcgtttgatctgctatatttgaac
ggcgagccgctgctgcaaaaggacttcgccgagcgtcgggcgctgctccaggagcacttc
cagcccgtggagcacgagttccagttcgcaaaggcgtccgatgccgaaacggtggacgaa
atccagaccttcctcgaggagagcgtcaaggacggctgcgagggcctcatggtgaagatg
ctcgagggcgagttcagccactaccagcccagcaggcgcaccgtcaactggctcaagctc
aagaaggactacctcgccggggtcggcgactcgctcgacctcgtcgtcgtcggtggctac
ttcggcaagggcaagcggacgaacgtctacggcgcgttcctcctcgcgtgctacgacgcc
gacgcggaggagtaccagacgatctgcaagatcggcaccgggttcagcgacgaggcgctg
caggcgcactacgagacgctcaagccgctcgaggtgcacgcgccccgcggggacatcaag
atcggcggcgcgaagccggacgtctggttcgagcccaaggtcgtctgggaggtcctgacg
gcggacctgagtctgagccccatatataccgccgcgcagggtttggtcgaggagcgcggt
atctccctgcggttccctcgattcatcaaaatccgagaagacaaggacgcagacgacgcg
acgggtcctgagcagatcgcagagatgtatcagcgtcaagccctcgctcagacgaagggc
gggaagaagagcaagggcggggacggggacgacggcttctggtga

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