Candidatus Desulfovibrio trichonymphae: RSDT_0919
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Entry
RSDT_0919 CDS
T05578
Symbol
rpoA
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
dtr
Candidatus Desulfovibrio trichonymphae
Pathway
dtr03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
dtr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
RSDT_0919 (rpoA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dtr03021
]
RSDT_0919 (rpoA)
03400 DNA repair and recombination proteins [BR:
dtr03400
]
RSDT_0919 (rpoA)
Enzymes [BR:
dtr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
RSDT_0919 (rpoA)
Transcription machinery [BR:
dtr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
RSDT_0919 (rpoA)
DNA repair and recombination proteins [BR:
dtr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
RSDT_0919 (rpoA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
RNA_pol_A_CTD
Motif
Other DBs
NCBI-ProteinID:
BAV92431
UniProt:
A0A1J1DRE6
LinkDB
All DBs
Position
1206698..1207741
Genome browser
AA seq
347 aa
AA seq
DB search
MLIKQGERLINARNWSELVKPERIVRDEEIADGMHGKFVCEPLERGYGTTIGNALRRVLL
ASLQGSAFVAAKIIGVQHEFTTIHGVLEDITDVVLNLKQVRLRMDTVEPQRLTLRRGTKG
PVTAGQITTNQHVEILNPAQHIATLTEDTVLEMELEARMGKGYVSADMHEGLSDEIGIIR
LDSSFAPVRKVAYSVEQARVGQMTNYDRLILEVWTDGSLPPEDAIAYSAKIIKDQISVFI
NFDDRVPGDMERAGGGGGEVNESLFKHIDDLELSVRATNCLRSINISLVGELVQRSEAEM
LRTRNFGRKSLDEIKDVLIEMGLDFEMKIDNFEKKYQEHKRKQQNEA
NT seq
1044 nt
NT seq
+upstream
nt +downstream
nt
atgcttatcaaacagggagaacgtcttataaacgcgcgcaactggtcggagcttgtcaaa
ccggaacggattgtgcgcgatgaagaaattgctgacggcatgcacggcaaatttgtttgc
gagccgcttgagaggggctacggcaccaccatcggcaatgcactgcggcgtgttcttctg
gcgtctttgcaaggctcggcctttgttgctgcgaaaattatcggtgtgcagcatgagttc
accacgattcacggcgtgctggaggatattaccgatgtagtgctcaatctgaagcaggtg
cgcctgcgtatggataccgtcgagccgcagcgtttgactttgcggagaggaacaaagggc
ccggtgactgcaggacagattacgacaaaccagcatgtggaaattttaaatccggcgcag
catattgctacgctcacagaagatactgtgctggaaatggaacttgaagcgcgcatgggc
aagggctatgtatctgcggatatgcatgaaggtctttctgatgaaatcggcataatcagg
ctggattcaagttttgcgcctgtgcgcaaagtcgcctacagtgtggagcaggcccgcgtt
ggtcagatgacaaattatgaccgtcttatccttgaagtctggactgacggctcgttgccc
cctgaagacgccatcgcttacagcgctaaaattatcaaggatcagatttccgtctttatc
aattttgacgaccgcgttcccggcgatatggagcgggccggcggcggcggcggtgaagtg
aacgaatctctgttcaagcatattgatgatcttgaactttctgttcgtgctaccaactgt
ctgcgaagcatcaatatatctctggtgggcgagctggtgcagcgctctgaagccgagatg
ctgagaacaagaaattttggtcgcaagtcgctggatgaaatcaaggacgtgcttatagaa
atgggccttgattttgaaatgaaaattgacaattttgaaaagaaatatcaggaacataaa
aggaaacagcaaaatgaggcatag
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