KEGG   Delftia tsuruhatensis: BI380_07525Help
Entry
BI380_07525       CDS       T04496                                 

Gene name
ligD
Definition
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
dts  Delftia tsuruhatensis
Pathway
dts03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:dts00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    BI380_07525 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:dts03400]
    BI380_07525 (ligD)
Enzymes [BR:dts01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     BI380_07525 (ligD)
DNA repair and recombination proteins [BR:dts03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     BI380_07525 (ligD)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S
Motif
Other DBs
NCBI-ProteinID: AOV01224
UniProt: A0A1D8IXR7
LinkDB All DBs
Position
1643335..1646013
Genome map
AA seq 892 aa AA seqDB search
MPAPRRSHPVTQQPRRAAAAGGQDKAAASLAAYRQKRDFTRTPEPSAEPSSDTIAGQPGT
GVLQFVIQKHWASHLHYDFRLELDGSMKSWAVPKGPSYDPADKRMAVQVEDHPMAYNRFE
GQIPPGQYGAGKVIIWDRGTWWPQGDAAEGLRKGKLKFELRGHKLQGRWTLVRMRGKDDA
KKPAWLLIKEHDGLERAAGEFSVVEDMPDSVAGLPLEPAAAATTETTTATATATAAARKQ
HAGTATMPQEIVPQLATLVDRPPTEAGQWIFESKFDGYRLLARIDSGTVRLVTRNGKDWT
ARMPALARALAALPLQTGWIDGEVLMLDSDERPDFQALQNAFDGEHTDLLVFFAFDLLWH
DGQDLRQQPVEQRRQRLQELLHKAPSDRVRFSQAFDAPPADLMAAACRLGLEGVIGKRRG
SAYVSRRSMDWIKLKCGHRQEFVIAGYTDPQGSRTGLGALVLAVHGEDGQLHAAGKVGTG
FNARTLADLRQRLDGLATGTSPLADTRGLGSQVHWVRPTLLAEVSFAQWTADGRIRHAVF
QGLRTDKPARRIAKEEPQHVPSTASSPRTATRHKAAPPRMAKAARLPTTIAITHAERVID
PSTGITKMELARYYATVAPFMITHLKARPVAMVRAPEGIEGELFFQKHMDQTPLQGIAAL
APELDPGHAPLMEVARREGLVAAAQMNTIEWHTWNARRDRIDRPDRMTFDLDPGEGVPWT
QVQEAATLLHVLLQELELPAFLKTSGGKGLHVVVPIKRLLDWDTVKAFSQAVVQHLASTV
PQRFVAKSGPRNRVGKIFVDYLRNGFGATTACAWTARARPGMGISVPVGWNELDRLTGGA
HWTIRSVDQRLRLGNSPWEHYGTAATSLGRAMKALGFEAPAREEPPTRKAQR
NT seq 2679 nt NT seq  +upstreamnt  +downstreamnt
atgcccgcaccgcgccgcagccacccggtcacgcagcagccgcggcgggctgctgcggcc
ggcgggcaggacaaggctgccgcttcgctggcggcctaccggcaaaagcgcgacttcacg
cgcacgccagagccctcggcagaaccttccagcgacacgattgcagggcagcccggcacg
ggtgtcctgcaattcgtcattcaaaagcactgggccagccatctgcactacgacttccgg
ctggagctggacggcagcatgaaaagctgggccgtgcccaagggccccagctacgacccg
gccgacaagcgcatggccgtgcaggtggaagaccaccccatggcctacaaccgcttcgaa
ggccagattccgccgggccagtacggcgcgggcaaggtcatcatctgggaccggggcacc
tggtggccacaaggcgacgccgccgagggccttcgcaagggcaagctcaagttcgagctg
cgcggccacaagctgcagggccgctggaccctggtgcgcatgcgcggcaaggacgatgcc
aaaaaacccgcgtggctgctgatcaaggagcatgacgggctggaacgcgccgccggcgaa
ttcagcgtggtcgaggacatgcccgacagcgtggccggccttcccctggaacctgcagca
gcggcaacgacagaaacaacaacagcaacagcaacagcaacagcggcagcacgaaagcag
cacgccggcaccgcgaccatgccgcaggagatcgtcccccagctggcgaccttggtggac
cgcccgcccacggaggccgggcaatggatcttcgagagcaagttcgacggctaccgcctg
ctggcccgcatcgacagcggtaccgtgcggcttgtcacgcgcaacggcaaggactggacc
gccagaatgcctgccctggcccgcgccttggcggccttgcccttgcaaacaggctggatc
gacggcgaggtgctgatgctggacagcgacgaacgccccgacttccaggccctgcagaac
gccttcgacggcgagcacaccgacctgctggtcttcttcgccttcgacctgctgtggcac
gacggccaggacctgcgccagcagcccgtggaacagcgccgccagcggttgcaggagctg
ctgcacaaggcgccgtcggaccgcgttcggttcagccaggcctttgacgccccgcccgcc
gacctgatggctgccgcctgccggctgggcctggagggcgtgatcggcaagcggcgcggc
agcgcctacgtctcgcggcgcagcatggactggatcaagctcaagtgcggccaccgtcag
gagttcgtgatcgccggctataccgatccccagggctcgcgcaccggcctgggggccctg
gtcctcgccgtgcatggcgaggacgggcagctgcacgcggccggcaaggtcggcacgggt
ttcaacgcacgcaccctggccgacctgcgccagcgcctggacggcctggccaccggcaca
tccccgctggcagacacccggggccttggcagccaggtgcactgggtgcgccccaccctg
ctggccgaagtctcgttcgcgcaatggaccgcggacggccgcatccgccacgccgtattc
cagggcctgcgcacggacaagcctgcgcgccgcatcgcaaaagaggagccacagcacgtg
ccatcgaccgcatcttcaccccgcaccgcaacccgccacaaagccgccccgccccgcatg
gccaaggcggcgcgcctgcccaccacgatcgccatcacccatgccgagcgtgtcatcgac
ccctccaccggcatcaccaagatggagctggcgcgctactacgccacggtggcccccttc
atgatcacccacctcaaggcccggcccgtggccatggtgcgcgcgccggagggcatcgag
ggcgagctgttcttccagaaacacatggaccagacgccgctgcagggcattgccgccctg
gcgcccgaactcgatcccggccatgcgccgctgatggaggtggcgcggcgtgaaggcctg
gtggcggccgcgcagatgaacaccatcgaatggcacacctggaatgcccgccgggaccgc
atcgaccggcccgaccgcatgaccttcgacctggaccccggcgagggcgtgccctggacg
caggtgcaggaagcggccaccttgctgcatgtgctgctgcaggagctggagctgccggcc
ttcctcaagaccagcggcggcaagggcctgcatgtggtcgtgccgatcaagcggctgctg
gactgggacacggtcaaggccttctcccaggccgtggtccagcacctggccagcaccgtg
ccccagcgcttcgtggccaagagcgggccacgcaaccgcgtgggaaaaatcttcgtggac
tacctgcgcaacggctttggcgccaccacggcctgcgcgtggacagcgcgtgcgcggccc
ggtatgggcatctccgtgcccgtgggctggaacgagctcgacaggctcacgggcggcgcg
cactggaccattcgctcggtggaccagcgcctgcgcctgggcaactcgccctgggagcac
tacggcacggcggccaccagcctgggccgcgccatgaaggcgctgggcttcgaggcaccg
gcccgcgaagagccgccaacgaggaaagcacaacgatga

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