Delftia tsuruhatensis: BI380_09400
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Entry
BI380_09400 CDS
T04496
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
dts
Delftia tsuruhatensis
Pathway
dts03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
dts00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BI380_09400
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dts03400
]
BI380_09400
Enzymes [BR:
dts01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BI380_09400
DNA repair and recombination proteins [BR:
dts03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BI380_09400
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
Glyco_tran_WecG
ERCC3_RAD25_C
IstB_IS21
Motif
Other DBs
NCBI-ProteinID:
AOV01553
UniProt:
A0A072TCP0
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All DBs
Position
2078720..2082214
Genome browser
AA seq
1164 aa
AA seq
DB search
MELPKLTPGKRFTLPRPVGSADALLLARLGEREKAAGRVTAIVTADASDAQRLIDEMAFF
APGLRCALFPDWETLPYDSFSPHQDLISERLATLWRINQRDKEHGADVVLVPATTALYRL
APPSFLAGYTFEFKSGQKLDEAKLKAQLTLAGYQHVSQVVSHGEYAVRGGLIDLFPMGSL
QPYRVDLFDDEIDSIRTFDPDTQRSLYPVPEVRLLPGREFPMDEDARAKFRQRWRELLEG
DPTRSRIYKDMGQGIATAGIEYYLPLFFDETATVFDYLGADATVVMHGDLEPAFQRFWQD
TKERFRLVQGDPERPALPPEVLFLSADQFYTRAKEHAQLALRPGTEDVADSAIFQKLEDL
SVVRGAEDPLARLQRHIAASAHRILLLAESDGRRESLLDFFRASGVNPPVFDSLAEFQGD
AGEKVGIATAGLMNGFAWVEEGLDFVTETELFATSPTGRRRRRQEQVSDVEALIKDLSEL
KVGDPVVHSDHGIGRYQGLVHMDMGQKNPDGTPAVQEFLHLEYAGNAVLYVPVSQLQLIS
RYTGVSPEDAPLHKLGGTQWEKAKRKAAEQVRDSAAELLNIYARRAARQGHAFRYSPQDY
EQFANDFGFEETADQRAAIHAVIQDMISPQPMDRLVCGDVGFGKTEVALRAAFVAITGGK
QVAFLAPTTLLAEQHYQTLVDRFSKWPIKVAEVSRFRSGKEITAAVKGIADGSVDIVVGT
HKLLSESTQFKNLGLLIIDEEHRFGVRHKEAMKAMRAEVDVLTLTATPIPRTMGMALEGL
RDLSVIATAPQRRLAIKTFVRNEGTGVIREAVLRELKRGGQCYFLHNEVETIENRKQKLE
EILPEARIAVAHGQMPERELERVMRDFVAQRYNILLCSTIIETGIDVPSANTILISRADK
FGLAQLHQLRGRVGRSHHQAYAYLMVPDLDSLTKQAQQRLEAIQQMEELGSGFYLAMHDL
EIRGAGEVLGENQSGNMMEVGFQLYNEMLSEAVRSLKAGKEPDLLSPLSASTDINLHAPA
LLPGDYCGDVHLRLSFYKKLATARTSDQIDTLLEEIVDRFGKLPPQAQTLIDVHRLRVLS
QPYGVVKVDAAPGVINITFKPQPPVDPMAIIHLIQKNKHIKLAGNEKLRIERALDNPKDR
AQMVRDVLRSLGQPLVEAKAAQPA
NT seq
3495 nt
NT seq
+upstream
nt +downstream
nt
atggaactgcccaagctcactcccggaaaacgcttcaccctgccccgccccgtgggcagc
gccgacgccctgctgctggcccgcctgggcgagcgcgagaaggcggcaggccgggtgaca
gccatcgtcacggccgacgcctcggatgcccagcggctgatcgacgagatggccttcttc
gccccgggcctgcgctgcgcgctgttccccgactgggagaccctgccctacgacagcttc
tctccccaccaggacctgatcagcgagcgcctggccacgctgtggcgcatcaaccagcgc
gacaaggagcatggcgccgacgtggtgctggtgcccgccaccaccgcgctgtaccgactg
gcgccgccctccttcctggccggctacaccttcgagttcaagagcggccagaagctggac
gaggccaaactcaaggcccagctgacgctggccggctaccagcatgtctcccaggtggtc
agccacggcgagtacgcggtgcgcggcggcctgatcgacctgttcccgatgggctcgctg
cagccctaccgcgtggacctgttcgacgacgagatcgactccatccgcaccttcgacccc
gacacccagcgcagcctctaccccgtgcccgaggtgcgcctgctgcccggccgcgagttc
cccatggacgaggacgcgcgcgccaagttccgccagcgctggcgcgagctgctggagggc
gatcccacgcgcagccgcatctacaaggacatgggccagggcattgccacggccggcatc
gagtactacctgccgctgttcttcgacgaaacggccaccgtcttcgactacctgggcgcc
gatgccaccgtggtcatgcatggcgacctggagccggccttccagcgcttttggcaggac
accaaggagcgcttccgactggtgcagggcgaccccgagcgcccggccctgccgcccgag
gtgctgttcctgtccgccgaccagttctacacgcgcgccaaggagcacgcccagctcgcg
ctgcgcccaggcaccgaggacgtggccgacagcgccatcttccagaagctggaggacctg
tccgtggtgcgcggcgcggaagaccctctggcgcgcctgcaaaggcacattgccgccagc
gcccaccgcatcctgctgctggccgagtccgatggccggcgcgaaagcctgctggacttc
ttccgcgcctcgggcgtgaacccgccggtcttcgactcgctggccgagttccagggcgat
gcgggcgagaaggtgggcattgccactgccgggctgatgaacggctttgcctgggtggag
gaaggcctggacttcgtcaccgagaccgagctgttcgccaccagccccacgggccgcagg
cgcaggcgccaggagcaggtcagcgatgtcgaggcactgatcaaggacctgtccgaactc
aaggtgggcgaccccgtggtgcactcggaccacggcatcggccgctaccagggcctggtc
cacatggacatgggccagaagaaccccgacggcacgccggccgtgcaggaattcctgcac
ctggagtacgcgggcaacgccgtgctctacgtgcccgtcagccagttgcagctgatcagc
cgctacaccggcgtctcgcccgaggacgcgccgctgcacaagctcggcggcacgcagtgg
gaaaaggccaagcgcaaggcggccgagcaggtgcgcgactccgcggccgagctgctgaac
atctacgcacgccgcgccgcacgccagggccacgccttccgctactcgccccaggactac
gagcagttcgccaacgacttcggcttcgaggaaacggcggaccagcgcgccgccatccac
gccgtgatccaggacatgatcagcccccagcccatggaccgcctggtctgcggcgacgtg
ggcttcggcaagaccgaggtggccctgcgcgcggccttcgtggccatcacgggcggcaag
caggtggccttcctcgcgcccaccacgctgctggccgagcagcactaccagaccctggtg
gaccgcttctccaagtggccgatcaaggtggccgaagtctcgcgctttcgctcgggcaag
gagatcacggcggccgtcaagggcattgccgacggctcggtggacatcgtcgtgggcacg
cacaagctgctgtccgagtccacgcagttcaagaacctgggcctgctgatcatcgacgag
gagcaccgcttcggcgtgcgccacaaggaagccatgaaggccatgcgcgccgaggtggac
gtgctcacgctgacggccacgcccatcccgcgcaccatgggcatggcgctggaaggcctg
cgcgacctgtccgtcatcgccaccgcgccccagcggcgcctggccatcaagacctttgtg
cgcaacgagggtacgggcgtgatccgcgaggccgtgctgcgcgagctcaagcgcggcggc
cagtgctacttcctgcacaacgaggtcgagaccatcgagaaccgcaagcaaaagctcgag
gaaatcctgcccgaggcacgcattgccgtggcccacggccagatgcccgagcgcgagctc
gaacgcgtgatgcgcgacttcgtggcccagcgctacaacatattgctgtgctcgaccatc
atcgagaccggcatcgacgtgcccagcgccaacaccatcctcatcagccgcgccgacaag
ttcggcctggcccagctgcaccagttgcgcggccgcgtgggccgcagccaccaccaggcc
tatgcctacctgatggtgcccgacctggacagcctgaccaagcaggcccagcagcggctg
gaggccatccagcagatggaggaactgggctcgggcttctacctggccatgcacgacctg
gagatccgcggcgccggcgaggtgctgggcgagaaccagagcggcaacatgatggaggtg
ggcttccagctctacaacgagatgctgtccgaggccgtgcgcagcctcaaggccggcaag
gagcccgatctgctcagcccgctgtcggcctccaccgacatcaacctgcacgcgccggcc
ctgctgccgggcgactactgcggagatgtgcacctgcgcctgtccttctacaagaaactg
gcgacggcccgcaccagcgaccagatcgacaccctgctcgaagaaatcgtggaccgcttc
ggcaagctgccgccccaggcgcagacgctgatcgacgtgcaccgcctgcgcgtgctgtcc
cagccctacggcgtggtcaaggtcgatgcggcgcccggcgtgatcaacatcaccttcaag
ccccagccgcccgtggacccgatggccatcatccacctcatccagaagaacaagcacatc
aagctggccggcaacgagaagctgcgcatagagcgcgccctggacaatcccaaggaccgc
gcccagatggtgcgcgacgtgctgcgcagcctgggccagccgctggtggaggcaaaggcg
gcccagcccgcatag
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