Duganella dendranthematis: HH213_04440
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Entry
HH213_04440 CDS
T06560
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
dug
Duganella dendranthematis
Pathway
dug03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dug00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HH213_04440
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dug03019
]
HH213_04440
03009 Ribosome biogenesis [BR:
dug03009
]
HH213_04440
Enzymes [BR:
dug01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
HH213_04440
Messenger RNA biogenesis [BR:
dug03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HH213_04440
Ribosome biogenesis [BR:
dug03009
]
Prokaryotic type
rRNA processing factors
HH213_04440
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
TMA7
Motif
Other DBs
NCBI-ProteinID:
QJD89417
LinkDB
All DBs
Position
939778..942906
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AA seq
1042 aa
AA seq
DB search
MKRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKSNIYKGVITRIEPSLEACFVSY
GEDRHGFLPFKEVARTYFKEGVDVRNASIKDALREGQEIMVQVEKEERGNKGAALTSFVS
LAGRYLVLMPNNPRGGGVSRRVEGEERQELRETMDKLDLPPGMSVIARTAGIGRNVDELQ
WDLNYLMQLWRAIEGAGKSASGAFLIYQESSLVIRAIRDYFQPDIGEILIDTDEIYEQAH
QFMSHVMPDMVHRVKRYSDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVSV
DVNSARATRGSDIETTAFHTNCEAAEEVARQLRLRDLGGLIVIDFIDMEVAKNQREVEQR
LKDALHHDRARVQMGKISRFGLMELSRQRLRPSLSEGSHVACPRCSGTGHIRDTESSALQ
VLRIIQEEAMKENSATIHVQVPVDVAAFLLNEKRSEVLKIETRHRINVILVPNKHLETPH
YKLERIKHDDPRLEDSAASYSLAETAETDMAYSKRQKEEAKPRQEAMVKTITPDQPAPLV
ERKPTETVIKPAPAPAPTPAPQGFFAKLISFFTGAPAAPALPQQPTIVVKAPAGADRGDR
NARGPRGRNRNGKTGRPEREEKEPGAARAGAGQEEGKAADANGRPPRQPRPPREPREGRE
PREAGAEGQGRERAERAERPERAERPERAERAERGERPPRQPREPRGDKAPVEAKVEELA
LNAGVPATGPVADAASILKTAPNAGPEGDENDVAGEGDEPRRRRRRGGRNRNRREREGAE
GVDGVEGQEGEAGEQAELSFTPVAETAAVAVTAVAVTEVVTEAVAVAAPAVEAAPVVDAA
PVVDAAPVVEAAPAAPVAEAAPVVVEAPAPAPVEAAPVAVVAEAIVPPAPVVEVAAETIA
APAVVEEAAPVAVAAPVMEAAPAPAPVAEAPVAAPVVLEATPVAVEVAPVVAEPVAAPAP
APVVAAPAPAPAPAPAPAPSATIDLQAVLGSAGLTLAATDPAKLRAAQEAAAQVAPPVRV
PRERKPVQQQVDEPLIQVDTRR
NT seq
3129 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcatgttatttaacgctacgcagcaagaagagctgcgcgtagcgattgtcgac
ggtcagaagctgatcgatatcgacatcgaaaccgccggacgcgaacagcgcaagtccaac
atctacaaaggcgtgatcacccgtatcgaaccgtcgctggaagcgtgcttcgtcagctac
ggcgaagaccgccacggtttcctgcccttcaaggaagtcgcccgcacctacttcaaggaa
ggcgtcgatgtccgtaacgcctcgatcaaggatgcgctgcgcgaaggccaggaaatcatg
gttcaggtcgaaaaagaagaacgcggcaacaagggcgccgccctgacctcgttcgtctcg
ctggccggccgctacctggtgctgatgccgaacaacccgcgtggtggtggcgtatcgcgc
cgcgtcgaaggggaagagcgtcaggaactgcgcgaaaccatggacaagctggacctgccg
ccaggcatgtcggtgattgcccgcaccgccggcatcggccgcaacgtcgatgaactgcag
tgggacttgaactacctgatgcaactgtggcgcgccatcgaaggcgctggcaaatcggcc
tcgggcgcgttcctgatctaccaggaatcgtcgctggtgatccgcgccatccgcgactac
ttccagccggacatcggcgagatcctgatcgacaccgacgagatctacgagcaagcccat
cagttcatgagccacgtgatgcccgacatggtgcaccgtgtaaaacgctacagcgacgac
gtgccgctgttctcgcgtttccagattgaacaccagatcgaaaccgcctacagccgcacc
gtgccgctgccatcgggcggcgccatcgtcatcgaccacaccgaagccctggtctcggtc
gacgtcaactcggcccgcgccacccgcggttccgacatcgaaaccaccgccttccacacc
aactgcgaagctgctgaagaagtggcccgccagctgcgcctgcgcgacttgggcggcctg
atcgtgatcgacttcatcgacatggaagtggccaagaaccagcgcgaagtggaacagcgc
ctgaaagatgcgctgcaccacgaccgtgcccgcgtccagatgggcaagatttcccgcttc
ggcctgatggaactgtcgcgccagcgcctgcgtccgtcgctgtcggaaggttcgcacgtt
gcctgcccacgctgctcgggcaccggccacatccgcgataccgaatcgtcggcgctgcaa
gtcctgcgcatcatccaagaagaagcgatgaaggaaaactcggccaccatccacgtgcaa
gtgcccgtggacgtcgccgctttcctgctgaacgaaaaacgcagcgaagtgctgaagatc
gagacgcgtcaccgcatcaacgtcatcctggtgccgaacaagcacctggaaaccccgcac
tacaagctggagcgcatcaagcacgacgatccgcgcctggaagacagcgccgccagctac
tcgctggccgagaccgccgaaaccgacatggcctacagcaagcgccagaaggaagaagcc
aagccgcgccaggaagccatggtcaagaccatcactcctgatcaaccggcgccgctggtc
gagcgcaagccgaccgaaaccgtgatcaagccagcaccggcgccagcgccgacgccggcc
ccgcaaggtttcttcgccaagctgatcagcttcttcaccggcgcgccagccgctccggcc
ctgccgcagcagccgaccatcgtggtcaaggcgccagccggcgccgaccgtggcgaccgc
aacgcccgtggcccacgcggccgcaaccgcaacggcaaaaccggccgtcctgagcgtgaa
gagaaagaaccaggcgcagcccgcgccggcgccggccaggaagaaggcaaggcagccgac
gccaacggccgtccaccacgtcagccacgtccaccccgcgaaccgcgtgaaggccgcgag
ccacgtgaagcgggcgccgaaggccagggccgtgaacgcgctgagcgtgcagaacgtccg
gaacgcgcagaacgtcctgagcgcgccgagcgtgcggaacgtggcgagcgtccaccacgc
cagccacgcgaaccgcgcggcgacaaggcgccagtagaagccaaagtggaagaactggca
ctgaacgccggtgttccagcgaccggtccagtggccgacgccgccagcatcctgaaaacc
gcaccgaacgccggtccggaaggcgatgaaaacgacgtcgcaggcgaaggcgatgagcca
cgccgtcgtcgtcgtcgtggcggccgtaaccgtaaccgtcgtgagcgcgaaggcgctgaa
ggcgtggatggcgtagaaggtcaggaaggcgaagcgggcgaacaggcagaactgagcttc
acgccagtcgcggaaaccgccgctgtggccgtcaccgctgtcgccgtgacggaagtcgtc
accgaggctgtggctgttgccgctccggcggttgaagctgccccagttgttgacgctgcc
ccagttgttgacgctgccccagtcgtggaagctgcacctgccgcgccagtagcagaagcc
gctccggtagtggtcgaggcgccagccccggcaccagtcgaagccgcgccagtcgccgtt
gtggcggaagcaattgttccgccagcaccggtagttgaagtggcagccgaaaccatcgcc
gcaccggccgtggtagaagaagccgcgccagtcgccgtcgccgcgccagtgatggaagca
gcaccggccccagcgcctgtagcagaagcgccagtcgccgcaccagtggtgctcgaagca
acgccagtagcagtagaagttgcaccggtggttgcagaaccagtggccgcaccagcgcca
gcaccggtcgttgccgcgcctgctcctgctccagcaccagcccctgcgccagccccatcg
gcgacaatcgacctgcaagcagtgctcggctccgccggcctgacgctggcagccaccgat
ccggcaaaactgcgtgcagcacaggaagctgctgcgcaagtcgcgccgccggtccgcgtg
ccgcgtgaacgcaagccagtacagcagcaagttgacgagccattgatccaggtcgatact
cgccgctaa
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