Nitratidesulfovibrio vulgaris DP4: Dvul_0439
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Entry
Dvul_0439 CDS
T00452
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
dvl
Nitratidesulfovibrio vulgaris DP4
Pathway
dvl03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
dvl00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Dvul_0439
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dvl03021
]
Dvul_0439
03400 DNA repair and recombination proteins [BR:
dvl03400
]
Dvul_0439
Enzymes [BR:
dvl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Dvul_0439
Transcription machinery [BR:
dvl03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Dvul_0439
DNA repair and recombination proteins [BR:
dvl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Dvul_0439
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
Motif
Other DBs
NCBI-ProteinID:
ABM27462
UniProt:
A1VAJ6
LinkDB
All DBs
Position
complement(563486..567604)
Genome browser
AA seq
1372 aa
AA seq
DB search
MGQLTKKFGKIDVSLPIPHLLNLQVDSYVKFLQEGATERRHDEGLEGVFRSVFPIEDFNR
TASLEFVSYEVGEPKYDQPECISKGLTYEAPIRIKVRLVVYDVDEDSGNRTIRDIKEQEI
YFGTLPLMTEKGTFIINGTERVIVNQLQRSPGIIFEHDSGKTHSSRKVLYSCRIIPMRGS
WLDFDFDHKDILYVRIDRRRKMPATILFKAMGMSKTDILDYFYKKEFYRLDPMGRLMWEV
QKDMYRKDSAFVDIEDGKGGTIVKAGKPITKRAWRLISEAGLETIEVAPDTIEGMFLAED
IVNPATGEVLAEAADEITASLVENLREAGISRLPVLHTKGLETSSSLRDTLVLDKTPDME
AAQVEIYRRLRPSSPPTPEIAASFFDNLFRSADYYDLSPVGRYKLNQRLGIDQSVDLRTL
TDDDILRAIRVLLHLKDSHGPADDIDHLGNRRVRPVGELVENQYRIGLVRMERAIKERMS
LQEVSTLMPHDLINPKPVAAVLKEFFGTSQLSQFMDQTNALSEVTHKRRLSALGPGGLTR
ERAGFEVRDVHTSHYGRICPIETPEGPNIGLIVSLTTYAKVNDFGFIETPYRIIREGALT
DDIKFLDASREQGEVVAQANAAVDADGKLADEYVTARVRGDVLMSHRDEVTLMDISPSQM
VSISAALIPFLEHDDANRALMGSNMQRQAVPLLRSEKPIVGTGMEGDVARDSGACILAEG
PGIVRYADATRIIVSYENGLYPDRGGVRAYDLQKYHKSNQNSCFGQRPTCHPGQIVKKGD
VLADGPGIEDGELALGKNLVVAFMPWCGYNFEDSILISERVVKEDVFTSIHIEEFEVVAR
DTKLGPEEITRDIPNVGEDMLRNLDGSGIIRIGASVKPDDILVGKITPKGETQLTPEEKL
LRAIFGDKARDVKNTSLKVPPGIEGTIIDVKVFNRRSGEKDERTRNIEDYETARIDKKEQ
DHVRALGDALRDRLADTLVGKQIAVTLPGKRKGEVLAEAGAPMTRELLDALPVKRLAGLF
KSREVDEMVDTALEDYDRQVAFLKGIYDSKREKVTEGDDLPPGVIKMVKVHIAVKRKLNV
GDKMAGRHGNKGVVSCILPEEDMPFFADGRPVDIVLNPLGVPSRMNIGQIMETHLGWGAK
ELGRQLAEMLDSGAAMATLRHEVKDVFRSATIAKLVDEMDDETFRKAVSKLRTGIVTKTP
VFDGASEEDIWSWIERAGMDGDGKTVLYDGRTGDKFYNRVTTGVMYILKLHHLVDEKIHA
RSTGPYSLVTQQPLGGKAQFGGQRLGEMEVWALEAYGASYLLQEFLTVKSDDVTGRVKMY
EKIVKGDNFLEAGLPESFNVLVKELMSLGLNVTLHQEEGKKRPKRVGFMSAL
NT seq
4119 nt
NT seq
+upstream
nt +downstream
nt
atgggccagcttacgaagaagttcggcaagatcgatgtctcgctccccattccgcatctg
ctgaacctgcaggtggattcctatgtgaaattcctgcaggaaggagcgaccgaacgcaga
cacgatgaaggcctcgaaggggtcttcaggtcggtgttccccattgaggatttcaaccga
accgccagtctcgagttcgtcagctatgaagtgggcgaacccaagtacgaccagcccgaa
tgcatatccaagggcctcacctacgaagcgcccattcgcataaaggttcgtctcgtcgtc
tatgacgtggacgaagactctggcaaccgcaccatccgtgacatcaaggaacaggagatc
tacttcggtaccctgcccctgatgaccgagaagggcaccttcatcatcaacggcaccgaa
cgcgtcatcgtcaaccagttgcagcgttcgcccggtatcatcttcgagcacgattcgggc
aagacccattcgagccgcaaggtgctctactcgtgccgcatcatccccatgcgcggctcg
tggctcgatttcgacttcgaccacaaggacatcctgtacgtccgcatcgaccgccgccgc
aagatgcccgcgaccatcctcttcaaggcgatggggatgtccaagaccgacatcctcgac
tacttctacaagaaggagttctaccgcctcgaccccatgggccgtctcatgtgggaagtc
cagaaggacatgtaccgcaaggattctgccttcgtcgacatcgaggacggcaagggcggt
accatcgtcaaggctggcaagcccatcaccaagcgtgcatggcgcctcatctccgaagcc
gggctcgagaccattgaggtggctcctgacaccatcgagggcatgttcctcgccgaagac
atcgtgaacccggccactggtgaagtgcttgccgaggctgccgacgaaatcaccgcttcg
ctggtcgagaacctgcgcgaagccggcatttcgcgcctgcccgtgctgcacaccaagggt
cttgagacctcgtcttcgcttcgcgacaccctcgtgctggacaagacccccgacatggag
gccgcacaggtcgagatataccgtcgcctgcgtccgagctcgccgcccacgcctgagatc
gccgcgtcgttcttcgacaatctcttccgtagcgccgactactacgacctgtcgccggtg
ggccgctacaagctcaaccagcgtcttggcatcgaccagtccgtcgacctgcgcaccctc
accgatgacgacatcctgcgcgccatccgcgtgctcctgcacctgaaggactcgcacggc
cctgccgacgacatcgaccatctgggcaaccgccgtgtgcgccccgtgggcgaactggtc
gagaaccagtaccgcatcggtctcgtccgcatggaacgcgccatcaaggaacgcatgagc
cttcaggaagtctccacgctcatgccgcacgacctcatcaacccgaagcccgtggccgcg
gtgctgaaggagttcttcggaacctcgcagctttcgcagttcatggaccagaccaacgcc
ctttccgaagtgacgcacaagcgtcgtctctcggccctcggccccggtggtctgacgcgc
gaacgtgcgggcttcgaagtacgagacgtgcacacgtcgcactacggtcgtatctgcccc
atcgaaacgcctgaaggcccgaacatcggcctcatcgtttcgttgaccacctacgccaag
gtgaacgatttcggcttcatcgagacgccctatcgcatcatccgcgaaggagccctcacc
gacgacatcaagttcctcgacgcctcgcgcgaacagggcgaagtcgtggcgcaggccaac
gcagccgtcgatgccgatggcaagctggcagacgaatacgtcaccgcccgcgtgcgcggc
gacgtgctcatgtcgcaccgtgacgaagtgacgctgatggacatctcgcccagccagatg
gtctccatctccgccgcgctcatccccttccttgagcacgacgacgccaaccgcgcgctc
atgggttcgaacatgcagcgtcaggccgtgccgcttctccgttccgagaagcccatcgtc
ggcaccggcatggaaggcgacgtggcccgcgactcgggcgcgtgcatcctcgccgaaggc
cccggcatcgtgcgctacgccgacgccacgcgcatcatcgtcagctacgagaacgggctc
taccccgatcgtggcggcgtgcgcgcgtacgaccttcagaagtaccacaagtccaaccag
aactcgtgcttcggccagcgtcccacctgtcatcccgggcagatcgtcaagaagggcgac
gtgctcgccgacggccccggcatcgaggatggcgaactggccctcggcaagaacctcgtc
gtggccttcatgccctggtgcggttacaacttcgaagactccatcctcatctccgaacgg
gtggtgaaggaggacgtcttcacttcgatccacatcgaagagttcgaagtcgtcgcccgt
gacaccaagctcggccccgaagagatcacccgcgacatcccgaacgtcggcgaggacatg
ctccgcaacctcgacggcagcggcatcatccgcatcggtgccagcgtgaagcccgacgac
atcctcgtcggcaagatcacgcccaagggcgagacccagctcacccccgaagagaagctc
ctccgggccatcttcggcgacaaggcacgcgacgtgaagaacacctccctcaaggtaccc
ccgggcatcgagggaaccatcatcgatgtgaaggtgttcaaccgtcgttccggcgagaag
gacgagcgcacccgcaatatcgaagactacgagaccgcgcgcatcgacaagaaggaacag
gaccacgtccgtgcccttggcgatgccctgcgcgaccgtctcgccgataccctggtgggc
aagcagattgccgtcaccctgcccggcaagcgcaagggcgaggtgctggctgaagctggt
gcccccatgacccgcgaacttctcgacgccctgcccgtcaagcggctggcaggtctgttc
aagagccgtgaggtcgacgagatggtcgacacggccctcgaggattacgaccgtcaggtg
gccttcctcaagggcatctacgactcgaagcgcgagaaggtcaccgaaggcgacgacctg
ccccccggcgtcatcaagatggtcaaggtgcacatcgccgtgaagcgtaagctgaacgtg
ggcgacaagatggccggccgtcacggtaacaagggtgtcgtttcgtgcattctgcccgaa
gaggacatgcccttctttgccgacggacgcccggtcgacatcgtgctgaaccccctcggc
gtgccttcgcgaatgaacatcggccagatcatggagacccacctcgggtggggtgccaag
gaactgggccgtcagctcgccgaaatgctcgacagcggtgccgccatggcaacgctgcgc
cacgaggtcaaggacgtgttccgttccgccaccatcgccaagttggtcgacgagatggac
gacgagaccttccgcaaggccgtgtcgaaactgcgcaccggcatcgtgaccaagaccccc
gtcttcgacggcgcgtccgaagaggacatctggtcgtggatcgagcgcgcaggcatggac
ggggacggcaagacggtactgtacgacggccgcaccggtgacaagttctacaaccgcgtc
accaccggggtcatgtacatcctcaagctgcaccacctggtcgacgagaagatacacgcc
cgctccacgggcccgtactccctcgtcacccagcagccccttggcggcaaggcccagttc
ggtggccagcgtctgggtgaaatggaagtgtgggcactcgaggcatacggcgcatcgtac
ctcctgcaggagttcctcaccgtcaagtccgacgacgtgacgggccgcgtgaagatgtac
gagaagatcgtgaagggcgacaacttcctcgaagccggtctgcccgaatcgttcaacgtt
ctcgtcaaggaactcatgtcgctgggtctgaacgtgacgctgcatcaggaagaaggcaag
aagcgcccgaagcgtgtcggcttcatgagcgcgctctag
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