Nitratidesulfovibrio vulgaris DP4: Dvul_2130
Help
Entry
Dvul_2130 CDS
T00452
Name
(GenBank) protein of unknown function UPF0027
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
dvl
Nitratidesulfovibrio vulgaris DP4
Brite
KEGG Orthology (KO) [BR:
dvl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
dvl03016
]
Dvul_2130
Enzymes [BR:
dvl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
Dvul_2130
Transfer RNA biogenesis [BR:
dvl03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
Dvul_2130
Prokaryotic type
tRNA splicing ligases
Dvul_2130
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
ABM29146
UniProt:
A0A0H3A9Z8
LinkDB
All DBs
Position
2472838..2474037
Genome browser
AA seq
399 aa
AA seq
DB search
MNRHGMNRRGQNRTGEDRPEPAGTASPRQTRDAAKDTRLALTLPPDAIDDKAWEQIENVL
SLDCLVRLAIMPDVHAGYDLCIGGVALLEGTISPGFVGYDIGCGMCHVNTGRTVDELLPD
ALSRQRLFDRILHDIPVGTDMRGPGEFDAPRFLSASGDKGLTASVVAKAARQMATLGGGN
HFIEVGVNSRSEVGITLHSGSRRPGWDIAAWYMRQGRLFALRTPMGQAYLKDMQWAQEYA
LANRRAMLALVLKAFPSLDEATISHLLASTINENHNHAEVDGANVLHRKGATPAASGQPG
IIPANQRDGVYITRGLGNAYYLSSASHGAGRVMSRQKARAHIEQKTFERQMHGILCRTDK
GVLDEAPDAYKPIAPVLAAQDGLLVDVVDHFRPVVVIKG
NT seq
1200 nt
NT seq
+upstream
nt +downstream
nt
atgaatcggcatggcatgaacagacgaggccagaacaggacgggcgaagaccgccctgaa
ccagccggtacggcgtcaccgcgccaaacccgtgatgcggccaaggatacaaggctcgct
ctcacgctcccccctgacgccatcgacgacaaggcgtgggaacagatagagaacgtcctc
tccctcgactgtctcgtcaggctcgccatcatgcccgatgtccatgcgggatacgacctg
tgcatcggcggagtcgcccttctcgaaggcaccatcagtccgggcttcgtcggctacgac
atcggttgcggcatgtgccacgtcaacacaggtcgcacagtcgacgaactgctgcccgac
gcgttgtcgcgtcagcgactgttcgatcgcatcctgcacgatatccccgtgggaaccgat
atgcgagggcccggagagttcgatgctccgcgcttcctttcagcatccggcgacaagggg
ctgacggcaagtgtggtggcgaaggccgcgcgccagatggcgaccctcggtggaggcaat
catttcatcgaggtgggggtcaacagccgaagcgaagtcggcatcacgctgcattccggc
tcacgccgtccgggatgggacatagcagcgtggtacatgcggcaaggacgcctcttcgcg
ctgcgtactcctatggggcaggcttacctcaaggatatgcaatgggcacaggaatacgcg
ctggccaacaggcgtgccatgctcgcacttgtcctcaaggcctttccatcgctggacgaa
gccaccatctcgcacctgctggcatctacaatcaacgagaaccacaaccatgccgaggtc
gatggcgcaaacgtactgcatcgcaaaggtgcgacccccgccgcgtcgggacaaccgggc
atcattcccgccaatcagcgtgacggcgtatacatcacgcgaggcctcggcaacgcgtac
tatctttcgtcggcttcacacggcgcaggacgggtcatgtcgcgacagaaggcgcgcgcc
catatcgagcaaaagacattcgagcggcagatgcatggcattctctgccgcacagacaag
ggagttctcgacgaggcccctgacgcctacaaacccattgccccggttcttgccgcacag
gacggcctactcgtggatgtggtcgaccacttcagaccggttgtggtgatcaagggctga
DBGET
integrated database retrieval system
