Desulfosarcina widdelii: DSCW_23160
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Entry
DSCW_23160 CDS
T06303
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
dwd
Desulfosarcina widdelii
Pathway
dwd03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
dwd00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
DSCW_23160 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dwd03021
]
DSCW_23160 (rpoB)
03400 DNA repair and recombination proteins [BR:
dwd03400
]
DSCW_23160 (rpoB)
Enzymes [BR:
dwd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
DSCW_23160 (rpoB)
Transcription machinery [BR:
dwd03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
DSCW_23160 (rpoB)
DNA repair and recombination proteins [BR:
dwd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
DSCW_23160 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
Peptidase_M23
Peptidase_C31
Motif
Other DBs
NCBI-ProteinID:
BBO74899
UniProt:
A0A5K7Z3R7
LinkDB
All DBs
Position
complement(2423790..2427872)
Genome browser
AA seq
1360 aa
AA seq
DB search
MSKRPTANKRIRKSFGKIKKIVEIPDLIGMQRDSYQRFLQMNVPPEKREDIGLQAVFKSV
FPIKDFTGSASLEFVSYRFAEIKHSEEECVHRGMTYELPVRITVRLVVYDLDKDTGVSNI
RDIKEQEIYFGTIPLMTDKGTFIINGTERVVVSQLHRSSGVFFDHDKGKSHSSGKIIYSS
RIIPVRGSWIDLEIDPKDIVYIRIDRRRKFPVTVLFKAFGYSTEDLLSYFYNTEKITFEK
SEYYREVAPKVLKGTRASKDVVDPESGEIIVKKGRMFTQRALKQMAGKITRVPIEREDLL
DKSVAFSIADPQTEAVIAQAGDVIDETLLKQLEDAHVEAFELLFIDGASSSDSIRKTLLL
DKVANKEEALIEIYRLLRPGNPATPEVAQDFLDHLFFKSSYYDLSGVGRLKINLRLGIDT
PVNVRTLRKEDILLTAKTLVELRDTQGVVDDIDHLGNRRVRAVGELLENQYRIGLVRMER
AIKERMSLQEVDALMPHDLVNPKPVSAVVKEFFGTSQLSQFMDKTNPLSETTHKRRLSAL
GPGGLTRERAGFEVRDVHPSHYGRICPIETPEGPNIGLIVSLSTYAKVNDFGFIETPYRV
VEDATVSKDVKFLSAFEEKDHPIAQANAPIDENNQYINPTVTSRVAGELMMVEREKIELM
DISPNQLVSVSASLIPFLENDDANRALMGSNMQRQAVPLIKAEAPLVGTGIEGVVARDSG
VTIVASRDGEVVDVDASRIVLRHDSAEAGHDKQVTIYNLHKFVRSNQNTCFNQRPMVKKG
QFVNAGEIIADGPATEQGELALGKNVTVAFMPWGGYNFEDSILVSERLVRDGVYTSVHIE
EFEVVARDTKLGKEEVTRDIPNVGEEALRNLDDSGIIRLGAEVNQGDILVGKITPKGETQ
LSPEEKLLRAIFGEKAGDVKDTSLRVPPGVEGIVIDAKIFSRRGVDKDERTHAIEKAEMA
AMEKNKNDEIKIIGQSVRSQLESLLDGEKCSVSLKKGKKVLLAKNTAIEPGILSDIPVAD
LEGLLFDDAVLTEKVHQVLDAYRAQVARCQEEFEARLGRFEKGDELPPGVIKMVKVYVAM
KRKLSVGDKMAGRHGNKGVVSRILPIEDMPYFANGNPVDMVLNPLGVPSRMNVGQILEIH
LGLAAKGLGDQLNALLEESKVQDLRKKLDAIFEGAAGNLKKMSDTEIKDFAAFYRGGVHM
ATPVFDGAKEEEIKNLLTEAGLSPTGQTTLYDGHTGEAFKEKITVGTMYMLKLHHLVDDK
IHARSIGPYSLVTQQPLGGKAQFGGQRLGEMEVWAMEAYGAAHALQEFLTVKSDDMAGRT
RMYEKIVKGQNVLEPGIPESFKVLTKELQSLGLDVTLLEE
NT seq
4083 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaaaagaccaacggcgaacaagagaattagaaaaagctttggcaaaatcaagaaa
attgtagaaatcccagatctgattggaatgcagcgcgattcctatcagcgatttctccaa
atgaacgtgccccccgaaaagcgggaggacatcggtttgcaggcggttttcaagtccgta
tttcccataaaggattttacgggcagtgcttctctggagtttgtgtcttatcgatttgcc
gagatcaagcatagcgaggaagagtgtgttcatcgcggaatgacctacgagctgccggtg
cgcatcaccgtgcggctggtggtctacgatttggacaaagacaccggtgtatccaatatc
agggacatcaaggaacaggagatttatttcggcaccattcctttgatgaccgacaaggga
acgttcatcatcaacggaaccgagcgtgttgtcgtcagccagctccatcgttcgtcaggc
gtttttttcgaccacgacaagggcaaaagccactccagcgggaaaatcatatacagttcc
cggatcatcccggttcggggatcgtggatcgacctggagatcgatcccaaggacatcgtt
tacatccggatcgaccgccggagaaagtttcccgtcaccgtactgttcaaagccttcggg
tattccaccgaggatcttttgagctatttctacaacaccgagaaaatcaccttcgaaaag
agcgagtactaccgggaggtcgccccgaaagtattgaagggtacccgggccagcaaggat
gtggtcgatccggaaagcggcgaaatcatcgtcaagaaaggtcgcatgttcacccagcgg
gccctcaagcagatggcgggaaaaattacccgggttcccatcgaacgcgaggacttgctt
gacaaatccgtcgccttttccatcgccgacccgcagaccgaggcggtgattgcccaggcc
ggagacgtcattgacgaaacccttctgaaacaactggaagatgcccacgtcgaagccttc
gaactgcttttcatcgacggggcctccagcagcgactccatccgcaagacccttcttttg
gacaaggttgccaacaaagaggaagcgttgatcgagatctaccggctgctgcgaccggga
aatccggccacccccgaagttgcccaggattttctggatcatctctttttcaagtcttcc
tattacgacctgtccggtgtggggcggctcaagatcaatctgcgtttgggcatcgatacg
ccggtcaatgtgcgaacgctccgcaaagaagacattttgctgacggccaaaacgctggtc
gaactgcgcgacacccagggtgtggtcgatgatatcgatcatctgggcaatcgcagggtc
agggccgtcggcgaactgctcgaaaaccagtaccgcattggtctggtgcgcatggagcgg
gccatcaaggagcgtatgagcctgcaggaagtcgatgccctgatgccccatgacctggtg
aaccccaaaccggtttcggcggttgtcaaagagttcttcgggaccagccagctcagccag
ttcatggacaagaccaaccccctgtccgagaccacccataagcgccgcctgagcgctctg
ggacccggtggtctgacccgtgaacgggccgggttcgaggtccgcgatgtgcatccgtcg
cactacgggcgcatctgccccatcgaaacgccggaaggtcccaacatcggactcatcgtt
tctctgagcacttacgccaaggtcaacgattttggctttatcgagacgccctaccgggtt
gtcgaagacgccacggtatccaaggacgtcaaatttctcagcgccttcgaggaaaaggat
caccccatcgcccaggccaatgcgcccatcgacgagaacaaccagtatatcaatccgacg
gtgacctccagggttgccggcgaactgatgatggtcgagcgggaaaagatcgaactgatg
gatatttcgcccaatcagttggtgagtgtttccgcttccctgattccttttctcgagaat
gacgacgccaaccgcgccctgatggggtccaacatgcagcgccaggccgttccgctgatc
aaggccgaggcgccgctggtgggaaccggcatcgaaggggtggtggctcgcgattccggc
gtaaccattgtggccagccgcgacggtgaggtggtcgatgtggacgcttcgcgtatcgtt
ctgcggcacgattctgccgaagccggtcacgacaaacaggtaaccatttacaacctgcac
aaattcgtccggtcgaatcagaacacctgtttcaatcagcgtcccatggtcaaaaaaggc
cagttcgtgaacgctggcgagattatcgccgacggccccgccaccgagcagggagaactc
gctttgggtaaaaatgtcaccgtggccttcatgccctggggcggatataacttcgaggac
tcgattctcgtcagcgaacgtttggtcagagatggagtttatacctcggtacacatcgag
gagttcgaagtggtggcccgggacaccaagctgggtaaggaagaggttacccgcgatatc
cccaatgtaggcgaagaggccttgaggaatctggacgacagcggtattatccgtctgggt
gccgaagtgaatcagggggatattctggtcggtaaaatcacccccaaaggtgaaacccaa
ctttctcccgaagagaagctgctcagagcgatattcggagagaaggccggtgacgtcaag
gatacctcgcttcgggttccgccgggtgtcgaggggatcgtcattgatgccaaaattttc
tcccgccggggcgttgacaaggacgaacgcacccatgccatcgaaaaagccgaaatggcg
gcgatggagaagaacaagaacgacgagatcaaaattatcggccaaagcgtgcgttctcaa
ttggagtcgctcctggacggtgagaagtgttcggtttccttgaaaaagggcaagaaggtt
cttctggccaagaacaccgccattgaaccgggcatcctgtccgacatccccgtggccgat
ttggagggactgctttttgacgacgccgttcttacagagaaggtccatcaggtattggac
gcctaccgcgcccaggtggcccgctgccaggaagagttcgaagcccggctggggcgtttc
gagaagggcgacgaactgccccccggcgtgatcaaaatggtcaaagtctatgtggccatg
aagcgcaaactctccgtgggggacaagatggccgggcgccatggcaacaaaggtgtagtt
tccaggattctgcccatcgaagacatgccttacttcgccaacggcaatccggtcgatatg
gtgctcaatcccttgggggttccgtcccgcatgaacgtcggccagattcttgaaattcac
ctgggcctggcggccaagggactgggcgaccagctcaacgccttgctcgaagagagcaag
gtgcaggatctgcgcaagaagttggacgcgattttcgaaggcgctgccggcaacctgaaa
aagatgagtgacacggaaatcaaggattttgccgctttctaccgtggtggcgttcacatg
gcgacacccgtatttgacggtgccaaagaggaagagatcaagaacttgctgaccgaggcg
ggattgagccccaccggccagacaacgctgtatgacggccatacgggagaggccttcaaa
gagaaaatcactgtcggcaccatgtacatgctcaaattgcaccaccttgtcgacgacaag
atccacgcccgctctatcgggccctattctcttgttacccagcagcctttgggtggcaaa
gcccagtttggcggtcagcggttgggcgaaatggaggtctgggccatggaggcctacggc
gccgcccatgccctgcaggaatttctcacggtaaaatccgacgacatggcgggacgtacc
cgcatgtacgagaaaatcgtcaaggggcagaacgttttggagccgggtatccccgaatcg
ttcaaggtgctcaccaaagagcttcagagcctggggctggatgtgacccttttggaggag
taa
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