KEGG   Durio zibethinus (durian): 111314657Help
Entry
111314657         CDS       T05242                                 

Definition
(RefSeq) DNA ligase 6 isoform X1
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
dzi  Durio zibethinus (durian)
Pathway
dzi03030  DNA replication
dzi03410  Base excision repair
dzi03420  Nucleotide excision repair
dzi03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:dzi00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    111314657
   03410 Base excision repair
    111314657
   03420 Nucleotide excision repair
    111314657
   03430 Mismatch repair
    111314657
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:dzi03032]
    111314657
   03400 DNA repair and recombination proteins [BR:dzi03400]
    111314657
Enzymes [BR:dzi01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     111314657
    6.5.1.6  DNA ligase (ATP or NAD+)
     111314657
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     111314657
DNA replication proteins [BR:dzi03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    111314657
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     111314657
DNA repair and recombination proteins [BR:dzi03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     111314657
   NER (nucleotide excision repair)
    Other NER factors
     111314657
   MMR (mismatch excision repair)
    Other MMR factors
     111314657
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DRMBL DNA_ligase_A_C UBA_4 RMMBL Lactamase_B_2
Motif
Other DBs
NCBI-GeneID: 111314657
NCBI-ProteinID: XP_022771967
LinkDB All DBs
Position
Unknown
AA seq 1414 aa AA seqDB search
MPPRKAPQMFSQSSSSTTAAAKALTLDSTQLYLTALNSPHPNLSFSPIPSSFPPSKLIPK
TRFLIDSFRYPTISFSAAYFLSHFHSDHYSGLSPSWSKGIIFCSHTTSLLLIQILKIPPH
FIFPLALNDPVVVDGCEVILIDANHCPGAVQFLFKVPTKNGSFERYVHTGDCRYCNSMKM
NSYLNGFVGCDAIFLDTTYCDPKFVFPSQEESVDYVVSVVDRIGKEFEKERVLFLVATYV
VGKEKILVEVARRCKRKICVDGRKMEILRVLGYGDNGVFTEDESESDVHVVGWNVLGETW
PYFRPNFARMKEIMVEKGYEKVIGFVPTGWTYEVKRNKFAVRSKDTFEIHLVPYSEHSNY
DELREYVKFLKPKKVIPTVGMDIEKLDSKHADKLRKHFAGLVDEMANKKDFLMGFHRGNC
ESVEKIEVDASAGLNEEKDMERKRNVSEMKTDESNDIDTTLNDSSSVHKPDSHDSTMPSE
EERERIIEEFWECLPKWVTRDQILDLISSSGWNIVEAVSNFYEREIELYEQVSAFGTSDS
TSLARSPNKSVSLLNSGPFRSSKRESVSIRLSEASKSPSLKLSVQSSISPGKRKKNTENK
LNKKLKSNSKLESSGSKQPTITSFFSKLLADDSEGGRTCQKNEECPKGESTLPSNLTKSY
LEKIDQFIQIINAKESSRNYVATLLEKTQGDINKALDLYYSNPEVNHGENTENLVLSSKS
VQVQSCNNDCSVSKNKPVPEESRCMAESSLQRQPVENVDTTLVSLPPDKYKPIEHACWRC
GQPAPYVHLARTFDLVGGQKGKIKATSMLCNMFRSLLALSPEDVLPAVYLCTNKIAADHE
NIELNLGGSLVTSALEEACGTSRSKIRDMYNDMGDLGDVAQACRQTQTLLAPPPPLLIRD
VLSVLRKISLQTGSGSTIRKKNLIVNLMRSCREKEMKFLVRTLVRNLRIGAMMKTILPAL
AQAVVMTSSPNLYHEATVDSLKEKLQDLSAAVIEAYNVLPNLDLVVPSLMKEGVAFSSSI
LSMVPGIPIKPMLAKITNGVQEVLKLFQNKAFTCEYKYDGQRAQIHKLADGIVRVFSRNG
DETTVRFPDLINIIKESCKPAAQTFILDAEVVAIDRKNGHKLMSFQELSSRGRGSKDSLV
TVDKIKVDICVFVFDIMFANGEQLLGFPLRQRRKCLKDLFLNEKLGHFEYAKEITVEAND
ACLTSEATLTRMNSFLEHALQCSCEGIMVKSLDTDAGYLPSKRGDTWLKVKRDYVEGLGD
SLDLVPIGAWHGNGRKAGWYSPFLMACYNPDTEDYQSVCRVMSGFSDSFYKEMKEFFSGD
RILAKKPAYYQTSEVPDMWFSPELVWEIKGADFTVSPVHQAAIGLVHPSRGISIRFPRFI
CCVSDRNPEECSTAADIADMFHSQTRKMDVTVEH
NT seq 4245 nt NT seq  +upstreamnt  +downstreamnt
atgccaccacgcaaagcaccgcaaatgttctctcaatcctccagcagtaccactgctgcc
gccaaagccctaaccctagattcgacccaactctatctcaccgcgctaaactctcctcat
cccaacctctctttctccccaattccctcctctttccctccctccaaactcatccccaaa
acccgtttcctcatcgactccttccgctaccccaccatcagcttctccgccgcttacttc
ctctcccacttccactccgatcactactccggcctctccccttcctggtccaaaggcatc
atcttttgttcccacaccacttccctcctcctcatccaaatccttaaaatcccgcctcat
ttcatcttccccttagctttaaatgacccagttgtagtagatggctgtgaggtcattctc
attgacgccaatcattgccccggggcagtgcagttcttattcaaagttcccactaaaaac
gggagctttgaaaggtatgttcacacgggtgattgtcgttattgtaattcgatgaagatg
aatagttatttgaatggatttgttggttgtgatgcgatttttttagatactacttattgt
gatccgaaattcgtgtttccttctcaagaagaatcggtcgattatgtagttagtgtggta
gataggataggaaaagaatttgagaaagagagggttttgtttcttgttgctacttatgtt
gttgggaaagagaagattttggttgaggttgcacggagatgtaagaggaagatatgtgtg
gatgggaggaaaatggagattttgcgtgttttggggtatggggataatggagtttttaca
gaagatgagagtgagagtgatgttcatgtcgttggttggaatgtgttaggtgagacttgg
ccgtattttcggccgaattttgcaagaatgaaggagattatggtggaaaaagggtatgag
aaggttattggttttgtgccaaccgggtggacttatgaagtcaaacggaataaatttgca
gtgaggtctaaggatacatttgagatacatctagtcccatatagcgagcattctaattat
gatgagcttagagaatatgtgaagtttttgaaaccaaagaaggttattcctactgttggc
atggacatcgagaagcttgacagtaagcatgctgataaactgagaaagcactttgctggg
ttggttgatgaaatggccaataagaaggacttcctgatgggttttcatcgtggcaattgt
gaaagtgtagaaaaaattgaagtggatgctagtgcaggcttgaatgaggaaaaggacatg
gagagaaagcgaaatgtatcagaaatgaaaacagatgagagtaatgatatagatactact
ttgaatgattcatcttctgtgcacaaacctgattcacatgattcaactatgccaagtgag
gaggaaagagagagaatcattgaggaattttgggaatgtttgcccaaatgggtcaccagg
gaccagatattagatttgattagcagctcaggatggaatattgttgaagctgtttctaat
ttctatgaacgcgaaattgagttatacgagcaagtctctgcttttggaacttctgattcc
acatccctggccaggtcacctaacaaatctgtgtcacttttaaattcaggaccttttaga
agtagcaaacgtgaaagtgtaagcattcgtttaagtgaagccagcaagtctcctagtttg
aaactttcagttcagagtagcatatctcctggcaaaaggaagaaaaacactgagaataag
ttgaataagaaattaaaaagcaattcaaaattggaatctagtgggtcaaagcaacctaca
ataacaagcttcttcagtaaacttttggctgatgactctgaaggtggtaggacttgtcaa
aaaaatgaggaatgccctaaaggtgaaagcaccttacctagtaatttgactaaatcatat
ttagagaaaatagatcagtttattcagataataaatgccaaggaatcatcaagaaattat
gtggccaccttacttgagaaaacccaaggagatatcaacaaggcactggatttatattat
agtaatcctgaggtgaaccatggtgagaatacagaaaatttggtactctctagcaaatca
gttcaggtccagagctgtaataatgattgctctgttagcaaaaacaagcctgttccagag
gagtcaagatgtatggcagagtcatctttgcaaagacaacctgtggaaaatgttgacaca
actcttgtatcattgccgcctgataaatataaacctatagagcatgcatgctggagatgt
ggtcagcctgctccatatgtccatcttgcacggacttttgacctggttggaggccaaaag
ggcaagatcaaagctacttctatgctttgcaacatgtttagaagtttgctggccttgtcc
ccagaggatgtgcttcctgctgtgtatctgtgcaccaacaaaattgctgctgaccatgaa
aatattgaattaaatcttggcggaagcttggttacatctgcactggaagaagcttgtggg
actagcaggtcaaaaataagggatatgtataatgatatgggtgatcttggtgatgttgca
caagcatgccggcaaactcaaactttacttgctcctccaccaccactattgattagggat
gtattgtctgtgctccggaagataagtttacaaacaggcagtggcagtaccatccggaag
aaaaaccttattgtgaatcttatgcgatcatgtagagagaaggagatgaagtttctggtg
agaactttggtcaggaatttgcgaattggagcaatgatgaaaacaattctgcctgcgttg
gctcaagcagttgtcatgacttcctctcctaatctttatcatgaagcaacagtagatagt
ctaaaagagaagcttcaggacctttctgcagcagtaatagaagcatataatgtacttccg
aatttggatttggttgttccttcgctaatgaaggaaggggttgcattttcatcttcaatc
ttgtcgatggttccgggaatacctattaaacccatgctagcaaaaattactaatggggtt
caagaagtactgaagctttttcaaaacaaagcttttacatgtgaatataagtatgacggt
cagcgtgcccaaattcacaaattggctgatggaatagtgcgtgtcttttcacgaaatggg
gatgaaacaacagtaagatttcctgatttaattaatataattaaggagtcttgtaagcct
gctgcccagactttcatattggatgctgaggttgttgcaatagataggaagaatggtcac
aagctcatgtccttccaagaattatcttcaagaggaagagggagcaaagattctttggtc
acagtggacaaaataaaggttgacatttgcgtatttgtgtttgacatcatgtttgctaat
ggagagcagctgttaggttttcctctacgccaaagaaggaaatgtttgaaggatttgttt
ctcaatgagaagctgggtcattttgaatatgccaaagaaattacagtggaagcaaatgat
gcttgtttaaccagtgaggccacattgactaggatgaactctttccttgaacatgcattg
cagtgttcatgtgaaggaattatggttaaatccttagatactgatgctggataccttccg
tcaaagcgtggtgacacatggttaaaggtgaagcgagactatgtggaaggattaggtgac
tcccttgatttagtcccaattggtgcttggcatggtaatgggagaaaagcaggatggtac
agcccattcctcatggcatgttacaacccagacactgaagattatcaaagtgtatgccgt
gttatgtctgggttctctgattcattttacaaagagatgaaagaattcttttctggcgat
aggatcttagccaaaaagccagcttactatcagacatctgaggtgcctgatatgtggttc
tctccagaacttgtttgggaaataaaaggtgcagacttcactgtgtcaccagttcatcag
gctgctataggtttagttcatccctcccgtggcatctcaataagattcccaaggttcatt
tgctgtgtgtcagatagaaatcctgaggaatgtagcacggcagcagatatagctgatatg
tttcattctcagactcgaaaaatggatgtgactgttgagcactga

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