Enterobacter soli: Entas_0398
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Entry
Entas_0398 CDS
T01604
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
eas
Enterobacter soli
Pathway
eas03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
eas00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Entas_0398
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
eas03019
]
Entas_0398
03016 Transfer RNA biogenesis [BR:
eas03016
]
Entas_0398
Enzymes [BR:
eas01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Entas_0398
Messenger RNA biogenesis [BR:
eas03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Entas_0398
Transfer RNA biogenesis [BR:
eas03016
]
Prokaryotic type
tRNA degradation factors
Entas_0398
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
CSD2
S1
HTH_12
RNase_II_C_S1
Rho_RNA_bind
OB_Dis3
TFIIE_beta
MetOD2
Motif
Other DBs
NCBI-ProteinID:
AEN63152
LinkDB
All DBs
Position
428870..431311
Genome browser
AA seq
813 aa
AA seq
DB search
MSHDPFQEREAEKYANPIPSREFIIEHLTKREKPANREELAVELNIEGEEQIEALRRRLR
AMERDGQLVFTRRQCYALPERLDLLKGIVIGHRDGYGFLRVEGRKDDLYLSSEQMKMCIH
GDQILAQPLGADRKGRREARVVRILVPKTSQIVGRYFTDAGVGFVVPDDSRLSFDILIPP
EEVMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDMALRTHEIPYVWPKA
VEEQIVGLKEVVPEESKAGRVDLRSLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIA
DVSYYVRPHTPLDNEARSRGTSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCMVCEMTIS
TKGRLTGYKFYEAVMSSHARLTYTKVWHMLQGDQDLREQYAPLVKHIEELHNLYKTLDQA
REERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEP
ALFRIHDKPSTEAITAFRTVLAELGLELPGGNKPEPRDYAELLESIGDRPDAEMLQTMLL
RSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLSLHRAIKYLLAQEQGHKGNTTETG
GYHYSMEEMLQLGQHCSMTERRADEATREVSDWLKCDFMLDQVGNVFKGVIASVTGFGFF
VRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLIGESGGQTYRLGDRVEVKVEAVNMDERKI
DFSLISSERGPRNVGKTAREKAKKGGNGNTSGKRRQAGKKVNFEPDSAFRGEKKKKPKAA
KKEARSAKKPSAKTQKIAAATKAKRAAKKTQAE
NT seq
2442 nt
NT seq
+upstream
nt +downstream
nt
atgtcacatgatcctttccaggaacgcgaagccgaaaaatacgcgaatccaatcccaagc
cgcgagttcatcattgaacacttaacaaagcgcgaaaaacccgccaatcgtgaagaactt
gccgttgaattaaacattgaaggtgaagagcaaattgaagcccttcgccgccgcctgcgt
gccatggagcgcgacgggcaactggtctttacccgccgccagtgctacgccctgcctgaa
cgtcttgatctgctgaaagggatcgtcattggtcaccgtgacggctacggtttcctgcgc
gtggaaggacgtaaagacgacctgtacctgtcatccgaacagatgaagatgtgcattcat
ggcgatcaaattctggctcagccactgggtgccgatcgtaaaggtcgtcgcgaagcgcgc
gtggtgcgcattcttgtaccgaagaccagccagattgtcggccgctattttaccgatgca
ggcgtgggttttgtggtgccggatgatagccgcctgagtttcgatatcctgatcccgcct
gaagaagtcatgggcgcgcggatgggctttgtggtcgtcgtcgaactgacccagcgcccg
actcgtcgcaccaaagcggtaggtaaaattgttgaagtgcttggcgataacatgggcacg
ggtatggcggttgatatggcgctgcgtacccatgaaatcccctatgtatggccaaaagcc
gttgaagagcagattgtcggcctgaaagaagtggtgccggaagagtccaaagcaggccgc
gtggacctgcgctccctgccgctggtcacgattgatggtgaagatgcgcgtgacttcgat
gacgccgtgtactgcgagaaaaaacgcggtggcggctggcgcctgtgggtggctatcgcc
gacgtaagctattacgttcgcccgcatacgccgctggataatgaagcccgcagccgtggt
acatcggtttacttcccgtcccaggttgtaccgatgctgccggaagtactctctaacggc
ctgtgctccctgaacccgcaggttgatcgcctgtgtatggtgtgtgagatgactatctcc
accaaaggccgcttaaccggttataagttctacgaagcggtgatgagctctcatgcgcgt
ctgacctataccaaggtctggcatatgctccagggcgaccaggatctgcgtgaacaatac
gcaccgctggtcaaacacatcgaagaactgcacaacctttacaagacgctggatcaggcg
cgcgaagagcgcggcgggatctcgtttgaaagcgaagaggcgaagtttatcttcaacgcc
gaacgtcgtatcgagcgtattgagcagacgcagcgtaacgatgcgcacaaactgattgaa
gagtgcatgattctggcgaacatctcagcggcgcgtttcgttgaaaaagccaaagagcca
gcactgttccgtatccacgataaaccaagcaccgaagcgattaccgcattccgtactgtt
ctggccgagctgggtcttgaactgccgggcggcaacaagccggagccgcgtgattatgct
gaactgctggagtccatcggcgaccgccctgacgcagaaatgctgcaaaccatgctgcta
cgctctatgaagcaagcgatttacgatccggaaaaccggggtcactttggcctggcgttg
cagtcgtatgcacacttcacgtcccctatccgccgttatccggatctctccctgcaccgt
gcgattaagtatctgctggcgcaggagcaggggcataagggcaacactacggaaacgggt
ggttatcactactcgatggaagagatgctgcaactgggccagcactgctccatgaccgaa
cgccgcgctgatgaagccacgcgtgaagtctccgactggctgaaatgcgactttatgctg
gatcaggtcggtaacgtcttcaagggcgtgattgccagcgtgaccggctttggtttcttt
gtccgtctcgacgatctgtttatcgatggcctggtacatgtgtccagtctggataacgac
tactaccgctttgaccaggttggccagcgtctgattggcgaatccggcggccagacttat
cgcctgggcgatcgtgtcgaagtgaaagtcgaagccgttaatatggacgagcgtaaaatc
gactttagcctgatttccagcgagcgtggcccacgtaatgttggcaaaactgcgcgtgag
aaagccaaaaaaggcggcaacggtaacaccagcggcaagcgtcgccaggctggtaaaaag
gtaaactttgagccggacagcgccttccgtggcgaaaagaaaaagaaaccgaaggccgcg
aagaaagaagctcgctcagcgaaaaagccttccgctaagacccaaaaaattgctgccgcc
accaaagcgaagcgcgcggcgaagaaaacgcaggcggagtaa
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