Intestinibaculum porci: SG0102_18290
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Entry
SG0102_18290 CDS
T05736
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ebm
Intestinibaculum porci
Pathway
ebm03030
DNA replication
ebm03410
Base excision repair
ebm03420
Nucleotide excision repair
ebm03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ebm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SG0102_18290 (ligA)
03410 Base excision repair
SG0102_18290 (ligA)
03420 Nucleotide excision repair
SG0102_18290 (ligA)
03430 Mismatch repair
SG0102_18290 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ebm03032
]
SG0102_18290 (ligA)
03400 DNA repair and recombination proteins [BR:
ebm03400
]
SG0102_18290 (ligA)
Enzymes [BR:
ebm01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
SG0102_18290 (ligA)
DNA replication proteins [BR:
ebm03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SG0102_18290 (ligA)
DNA repair and recombination proteins [BR:
ebm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
SG0102_18290 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SG0102_18290 (ligA)
MMR (mismatch excision repair)
DNA ligase
SG0102_18290 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SG0102_18290 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
HHH
HHH_3
RNA_pol_A_CTD
Auto_anti-p27
RNA_ligase
BRCT_2
Ish1
zf-NADH-PPase
HRI1
5_3_exonuc
zf-ribbon_3
Motif
Other DBs
NCBI-ProteinID:
BBH26895
UniProt:
A0A3G9JEU7
LinkDB
All DBs
Position
complement(1937253..1939238)
Genome browser
AA seq
661 aa
AA seq
DB search
MTKERLNELKELLNTYNYQYYVQDRPTVSDQEYDSLMDELIHIEQAHPEWRTPDSPSQRI
GGEVLEGFKKVTHRIPMMSLGDIFNEDEVYDFDDRVTSVIPNVEYVCELKLDGLSVSLVY
DHGVLQYAATRGNGTIGEDITHNVKTIKSIPLSIDFDGPLEVRGEIIMPKASLEKLNSAR
QEQGLPEFANCRNAAAGSVRQLDSRIAAKRGLDAYLYHVPDPSQIGATTHEECLNKMREL
GFKVNPHIKKVKNIKEVWAYIEEAATYRASLPYDIDGIVIKVNDLASQKRLGFTAKVPKW
AIAYKFPAEEVITKLKDIIFTIGRTGQITPNAVLNPVRVAGSIVQRATLHNEDNVKRKDI
RVGDDVVIRKAGDVIPEVVRSLKERRTGAERPFEMIKVCPTCGQPLVRKDNEAAYYCVNE
ECPSKIIEKLIHFASREAMNIDGLGDKIIEQFFNLGYIKTIADIYRIHTHEKEIMEIDGF
GRKSMDHLMEAIENSKKNSLEKLLFGLGIRGVGAKMADLLAANFKTIDALFEANIPQLTK
IPTVGETIANSIIAYRSNPKNIALINELKSLGLNMTYLKDTHVEASAFTDLTVVVTGTLE
TMSRKQVQEWLKNHGAKVTSSVSKKTSLVIVGKDPGSKYEKAVSLGIRIMQEDEFREVSG
L
NT seq
1986 nt
NT seq
+upstream
nt +downstream
nt
atgacaaaagaaagattaaatgagctcaaagagctcctcaatacctataattatcaatat
tatgtgcaggatcggccaactgtcagcgaccaggaatatgacagtttaatggatgaactg
attcatattgaacaggctcacccggaatggcgcacgcctgattcgcctagtcagcgcatt
ggcggagaagtcttagaaggcttcaagaaagttacccatcgcattccgatgatgtcttta
ggcgatatcttcaatgaagatgaagtctatgattttgatgatcgtgtcaccagcgttatt
cccaatgtggagtatgtctgtgaattaaaattagatggtttatctgtctctttagtttat
gatcatggcgttttacagtacgcggcaacacgtggcaatgggacgattggtgaagatatt
acccataacgtgaaaaccattaaatcgattcctttatcgattgattttgatggaccatta
gaagtgcgcggtgaaatcattatgcctaaggcttccttagaaaagctcaatagcgcccgc
caagagcaggggttaccggaatttgcgaactgccgtaatgcggctgcgggttctgtgcgg
cagcttgattcccgcatcgctgccaagcgcgggttagatgcgtacttatatcatgtccct
gatcctagccagattggcgccacaacgcatgaagaatgtctcaataaaatgcgtgaatta
ggctttaaagtcaatccgcatattaaaaaggtcaaaaatattaaagaagtatgggcatat
attgaagaagccgcaacttatcgtgcttcgcttccttatgatattgatgggatcgttatt
aaagtaaatgatttagcgtcgcaaaagcgcttaggctttactgctaaagtgccaaaatgg
gcgattgcttataagttcccagcagaagaagtcattacgaagttaaaagatattatcttt
accattggccggaccggtcagatcacccctaatgcggtcttaaatcctgtccgcgttgcg
ggttcgattgtccagcgtgccactttgcataatgaagacaacgtcaagcgcaaagatatc
cgcgtcggtgatgatgtggttattcgtaaagccggagatgtcattccagaagttgtccgt
tctttaaaagaacgtcgcaccggcgcagaacgtccttttgaaatgatcaaagtctgtccg
acatgcggtcagccgttagtacgtaaggacaatgaagcggcttattactgcgtcaatgaa
gaatgtccttctaagatcattgaaaagctgattcactttgcatcgcgtgaagcgatgaat
attgatggtttaggtgataagattattgaacagttctttaatttgggctatattaagacc
atcgccgatatttatcgcattcatacccatgaaaaagaaattatggaaattgatggcttt
ggccgtaagtcaatggatcatctgatggaagcgattgagaattctaaaaagaattcctta
gaaaagctgttatttggtttaggcatccgtggagttggggcgaagatggctgatttatta
gccgctaactttaaaaccattgatgcgttatttgaagcgaatattcctcagttaacgaaa
attccaaccgttggcgaaacgattgcaaacagtattattgcttatcgcagtaatcctaag
aatatcgcattgatcaatgaattaaagtccttaggacttaatatgacatatctgaaagat
acgcatgttgaagcgtcagcatttaccgatttaactgttgtcgtaacgggaaccttggaa
acgatgtcgcgtaaacaggtgcaggaatggctaaagaaccatggcgctaaggtgacaagc
agtgtctctaagaaaacaagtttagtgattgtcgggaaagatcctggctcgaaatatgaa
aaagctgtatcattaggaatccgcattatgcaggaagatgaattcagggaggtaagcggt
ctatga
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