Shimwellia blattae: EBL_c37220
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Entry
EBL_c37220 CDS
T02111
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase beta chain
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
ebt
Shimwellia blattae
Pathway
ebt03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ebt00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
EBL_c37220 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ebt03021
]
EBL_c37220 (rpoB)
03400 DNA repair and recombination proteins [BR:
ebt03400
]
EBL_c37220 (rpoB)
Enzymes [BR:
ebt01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
EBL_c37220 (rpoB)
Transcription machinery [BR:
ebt03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
EBL_c37220 (rpoB)
DNA repair and recombination proteins [BR:
ebt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
EBL_c37220 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
FapA
Motif
Other DBs
NCBI-ProteinID:
AFJ48769
UniProt:
I2BE15
LinkDB
All DBs
Position
complement(3854774..3858802)
Genome browser
AA seq
1342 aa
AA seq
DB search
MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQ
SYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQ
EVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR
GSWLDFEFDPKDNLFVRIDRRRKLPASIILRALDFTTEQILDLFFEKVVFEIRDNKLQME
LVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDIKHIEVPVEYIAGKVASKD
YIDEATGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRL
SALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLRNEIEGSGIL
SKEDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS
LGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTR
ERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYARTNEYGFLETPYRLVRDGVVT
DEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTARNKGESSLFSRDQVDYMDVSTQQV
VSVGASLIPFLEHDDANRALMGANMQRQAVPTLRSDKPLVGTGMERAVAVDSGVTAVAKR
GGVIQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQTPCVSLGEPVDRG
DVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVS
RDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVRGGDILVGKVTPKGETQLTPEEK
LLRAIFGEKASDVKDSSLRVPNSVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDL
SEELSILEAGLFSRIRAVLISGGVEAEKLDKLSRDRWLELGLTDEEKQNQLEQLAEQYDE
LKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRHIQPGDKMAGRHGNKGVISKIN
PIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAR
LREFIQRAYDLGADVRQKVDLNTFSDEEVLRLAENLRKGMPIATPVFDGAKEAEIKELLK
LGDLPTSGQITLFDGRTGEQFERQVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG
GKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMP
ESFNVLLKEIRSLGINIELEDE
NT seq
4029 nt
NT seq
+upstream
nt +downstream
nt
atggtttactcctataccgagaaaaaacgtattcgtaaggattttggtaaacgtccacaa
gttctggatgtgccttatctcctttctatccagcttgactcgtttcagaagtttatcgag
caagatcctgaaggacagtatggtctggaagctgccttccgttccgtattcccgattcag
agctacagcggtaattccgagctgcaatacgtcagctaccgccttggcgaaccagttttt
gacgtccaggaatgtcagatccgtggcgtgacctattctgcaccgctgcgtgtaaaactg
cgcctggtgatctacgagcgtgaagcgccggaaggcaccgtaaaagacatcaaagaacaa
gaagtctacatgggcgaaattccgctcatgaccgacaacggtacctttgttatcaacggt
actgagcgtgttatcgtttctcagctgcaccgtagcccgggtgtcttctttgacagtgac
aaaggtaagacccactcttccggtaaagtgctgtataacgcacgtattatcccttaccgt
ggctcctggctggattttgaattcgatccgaaagacaacctgtttgttcgtatcgaccgc
cgccgtaaactgccggcctctatcattctgcgcgcactggacttcaccactgagcagatc
ctggatctgttcttcgaaaaagtggtctttgaaatccgcgataacaaactgcagatggag
ctggttccggagcgtctgcgtggtgaaactgcctcttttgacatcgaagccaacggcaaa
gtctatgttgaaaaaggccgtcgtatcactgcacgccatatccgtcagctggaaaaagac
gatatcaagcatatcgaagttccggttgaatatatcgcgggcaaagtggcatctaaagac
tatatcgatgaagccactggcgagctgatttgcgccgcgaacatggagctgtctctggat
ctgctggctaagctgagccagtctggtcacaagcgtatcgaaacgctgttcaccaacgat
ctggaccacggcccgtatatttctgaaaccttacgcgttgacccgactaacgaccgcctg
agcgcgctggtagaaatctaccgcatgatgcgcccgggtgagccgccgacacgtgaagcg
gctgaaagcctgtttgagaacctgttcttctctgaagaccgctatgatctgtctgcggta
ggtcgcatgaagttcaaccgttctctgctgcgtaacgagatcgaaggctccggtatcctg
agtaaagaagacatcatcgatgtcatgaaaaaactcatcgatatccgtaacggtaaaggc
gaagtggatgatatcgaccacctcggcaaccgtcgtatccgttccgtaggcgaaatggcg
gaaaaccagttccgcgtcggcctggtacgtgttgagcgtgcggtgaaagagcgtctgtct
ctgggcgatctggataccctgatgcctcaggacatgatcaacgccaagcctatctctgcg
gcagtgaaagagttcttcggctccagccagctgtctcagtttatggaccagaacaacccg
ctgtctgagatcacgcacaaacgccgtatctctgcactgggcccgggcggtctgacccgt
gaacgtgcgggcttcgaagttcgagacgtacacccgacccactacggccgcgtgtgccca
atcgaaacgcctgaaggtccgaacatcggtctgatcaactccctgtccgtgtacgcacgt
actaacgaatacggtttcctcgaaaccccgtatcgtctggtgcgcgacggtgtggtgacc
gatgagatccattacctgtctgctatcgaagaaggcaactacgttatcgcccaggcgaac
tccaacctggatgaagaaggccacttcgtagaagacctggttaccgcccgtaacaaaggc
gaatccagcttgttcagccgcgaccaggttgactacatggacgtttccacccagcaggtg
gtttctgtcggtgcgtccctgatcccgttcctggaacacgatgacgccaaccgtgcattg
atgggtgcgaacatgcaacgtcaggcagtgccgaccctgcgctctgataagccgctggtt
ggtacaggtatggagcgcgcggtagcggttgactccggtgttactgcagttgccaaacgt
ggtggtgttatccagtacgtggatgcctcccgtatcgttatcaaagttaacgaagacgag
atgtacccgggcgaagcaggtatcgacatctataacctgactaagtacacccgttctaac
cagaacacctgtattaaccagactccttgcgtatcgctgggtgagccggttgatcgcggt
gacgttctggcagatggtccgtctaccgacctcggtgaactggcactgggccagaacatg
cgcgtggcgttcatgccatggaacggttacaacttcgaagactccatcctcgtttccgag
cgtgtggttcaggaagaccgtttcaccaccatccacattcaggaactggcttgtgtgtcc
cgcgacaccaaactggggccagaagagatcaccgctgatatcccgaacgtgggtgaagct
gcgctctccaaactggatgagtccggtatcgtatacatcggtgcggaagttcgcggtggc
gacatcctggttggtaaagttacgccgaaaggcgaaactcagctgaccccggaagagaaa
ctgctgcgcgctatcttcggtgagaaagcgtctgacgttaaagactcttccctgcgcgta
ccaaacagcgtttccggtacggttatcgacgttcaggtcttcacccgcgatggcgtggaa
aaagacaaacgtgcgctggaaatcgaagagatgcagctcaagcaggcgaagaaagacttg
tctgaagagctgtctatcctcgaagcgggtctgttcagccgtatccgtgcggtactgatc
tccggcggcgttgaagctgagaagctcgacaagctgtcacgggatcgctggctggaactg
ggcctgaccgacgaagaaaaacagaatcagctggaacagctggctgagcagtacgacgaa
ctgaaacacgagttcgagaaaaaactcgaagcgaaacgccgcaaaatcacccagggcgat
gatctggcaccgggcgtgctgaaaatcgttaaagtgtatctggctgtgaaacgtcacatc
cagccgggtgacaagatggcaggtcgtcacggtaacaagggtgttatctccaagatcaac
ccgatcgaagatatgccttacgatgaaaacggcacgccggtagacatcgtactgaacccg
ctgggcgtaccgtctcgtatgaacatcggtcagattctggaaacccacctgggtatggct
gcgaaaggtatcggcgacaagatcaacgccatgctcaagcagcagcaggaagtggccaga
ctgcgtgagttcatccagcgtgcttacgatctgggtgcagatgttcgtcagaaagttgac
ctgaacaccttcagcgacgaagaagttctgcgtctggctgaaaacctgcgcaaaggtatg
ccgatcgcaacaccggtattcgacggtgcaaaagaagcggaaattaaagagctgctgaaa
ctgggtgacctgccgacttccggccagatcacgctgtttgacggccgcaccggtgagcag
tttgagcgtcaggtaaccgtcggttacatgtatatgctgaaactgaaccacctggtcgac
gacaaaatgcatgctcgttccaccggttcttacagcctggttactcagcagccgctgggt
ggtaaggcgcagttcggtggtcagcgcttcggggagatggaagtgtgggcgctggaagca
tacggcgccgcctacaccctgcaggaaatgctcaccgttaagtctgatgacgtgaacggc
cgtactaagatgtataagaacatcgtagacggtaaccatcagatggaaccgggcatgccg
gaatccttcaacgtactgttgaaagaaatccgttcgctgggtatcaacatcgaactggaa
gacgagtaa
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